CX069917

Overview
NameCX069917
Unique NameCX069917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:79..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.348e-41
Identity = 96/237 (40.51%), Postives = 144/237 (60.76%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKV--KYQVCSPEALSKLLVK 772
            YD   TIFSPEGRLYQVEYA EA+    +A+GI   DGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y +++   E ++LAL  LSKT +   L  + +++A   +  SGK+  K  V   E + K + K
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTE--ELKPENIDMA--IVKDSGKLVEKISVDEIEKIVKAVYK 240          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.414e-40
Identity = 90/209 (43.06%), Postives = 131/209 (62.68%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM-DSTSLTSDKLEL 691
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK  VV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +L+M++PSG Y  ++              L+++YK+D++ EE + LALK LS T+  +  LT + +E+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSATLKPNEKLTPNTVEI 216          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 7.018e-40
Identity = 88/233 (37.77%), Postives = 144/233 (61.80%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            YD   T+FSP+GRL+QVEYA EA+    +A+G+   +GV+L+ +KK+ SKL++ + S EK+  IDD+VA   +G+++DA +LI+ AR+ AQ+    Y   + +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D+  G +L+  DP+G    +K            S L+++YK+ +S +EAV L +K L  +++      ++L+  E+  +  G  KY++   E + K L
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQN-SLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLEE----GEELKAPEIASITVGS-KYRIYGAEEVKKFL 233          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.667e-39
Identity = 90/244 (36.89%), Postives = 147/244 (60.25%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 787
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++ID+H+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNMDAAILLGMDALYKAAEG-KFDAGTLEVGVVSLEDK---KFRKLGPEEVENYVQQILEKHKGTE 244          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.549e-39
Identity = 86/233 (36.91%), Postives = 144/233 (61.80%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            YD   T+FSP+GRL+QVEYA EA+    +A+G+   +GV+L+ +KKV S+L++ + S EK+  IDD+VA   +G+++DA +L++ AR+ AQ+    Y   + +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D+  G +L+  DP+G    +K            S L+++YK+++  +EAV L +K L  +++      ++L+  E+  +  G  KY++   E + K L
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQN-SIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEE----GEELKAPEIASITVGN-KYRIYDQEEVKKFL 233          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.549e-39
Identity = 89/233 (38.20%), Postives = 141/233 (60.52%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            YD   T+FSP+GRL+QVEYA EA+    +A+GI  KDGV L+ EKKV S+L++  TS EK+  IDD VA   +G+++DA +LI+ AR+  Q+    Y   M +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D + G +L+  DP+G    +K            + L+++YK+++S +EA+++ +  L   +   S     ++  E+  +  G+  + V + E +SK L
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVE-KTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLD-SIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADES----SMKEPEIASIKMGET-FHVFTSEEVSKYL 233          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.941e-39
Identity = 89/244 (36.48%), Postives = 146/244 (59.84%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 787
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + +Y+ D++ + A+ L +  L +  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMNMDAAILLGMDALYRAAEG-KFDASTLEVGIVSLQDK---KFRKLVPEEVENYVQQILEKHKETE 246          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.941e-39
Identity = 89/214 (41.59%), Postives = 133/214 (62.15%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD     FSPEGRL+QVEYA+EAI    +AIG+ +K+GVVL  EK++TS LL+ S S EK+ +IDDH+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  D+S +EA  +A+ +L + M+   +T + +++A+V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPS-SVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.760e-39
Identity = 91/244 (37.30%), Postives = 145/244 (59.43%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 787
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D     +L+ +DPSG    +K             + + DYK+D++ E A+ L +  L K  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEG-KFDAGTLEVGVVSLQDK---KFRKLEPEEVGNYVQQILEKHKETE 244          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.760e-39
Identity = 83/200 (41.50%), Postives = 124/200 (62.00%), Query Frame = 2
Query:   65 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 661
            RYD   T+FSP+G L+QVEYAMEA+    +A+G+   D VVL  EKK T KL Q S S  K+  +DDH+A A AG+ +DA +L+N AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +  WK              L+++YK + S +E V+LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNYK-ETSGQETVKLAIRALLEVVES 200          
The following BLAST results are available for this feature:
BLAST of CX069917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_METM66.348e-4140.51Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULSO1.414e-4043.06Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_THEVO7.018e-4037.77Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_METAC2.667e-3936.89Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_THEAC4.549e-3936.91Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSMA_PICTO4.549e-3938.20Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_METBF5.941e-3936.48Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSA5A_ARATH5.941e-3941.59Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSMA_METTE7.760e-3937.30Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSA7_SOLLC7.760e-3941.50Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069917 ID=CX069917; Name=CX069917; organism=Citrus sinensis; type=EST; length=854bp
CCGAAGAGCATTACCTTNTGAGTAGGCTGACAAAGAATTACATTCATAAC
CAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAA
GGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGG
TAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAA
AGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATG
TACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGA
TGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACAT
ATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGT
GATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGT
TTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACA
TGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGT
GCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGA
TATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAA
CCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTT
TTCCTGATGCCTTCTGGCAAAGTGAAGTACCAAGTTTGCTCACCCGAAGC
TCTGAGCAAGTTGTTGGTGAAGCATGGAGTAACCCAACCTGCTGCTGAGA
CTTCTTGAATGAAGATCTTCCATGCTTTCATTATAACTTAATTTCAAAGC
AATT
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