CX069917

Overview
NameCX069917
Unique NameCX069917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:79..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.336e-35
Identity = 75/221 (33.94%), Postives = 129/221 (58.37%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKY 730
            YD   T+FSP+G L+QVEYA EA+     A+G+  KD ++   EKK   KL Q S +T K+YK+D+H+  A AG+ +DA +++N A+++ QR+  +Y++ + V+ LV+ +   +Q  TQ  G RP+GVS +  G+++N   QL+ ++PSG    W               ++++Y+D ++R+  V  A+K L + ++S S      +  E+ ++  GK  Y
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRKGLCAVGVKGKDSIIFAVEKKSVQKL-QDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMTRDRCVHFAIKALLEAVESGS------KNIELLVLERGKAAY 216          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.336e-35
Identity = 80/200 (40.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:   65 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 661
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK + S +E ++LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKL-QDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRALLEVVES 200          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.336e-35
Identity = 80/200 (40.00%), Postives = 120/200 (60.00%), Query Frame = 2
Query:   65 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDS 661
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++ + VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK + S +E ++LA++ L + ++S
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKL-QDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-ETSGKETIKLAIRALLEVVES 200          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 84/194 (43.30%), Postives = 118/194 (60.82%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 649
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + +GVVLV +K+  S LL+ S S EK++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    WK              L+ +Y   +S ++ + LAL+ L++
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGS-SVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 84/194 (43.30%), Postives = 118/194 (60.82%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 649
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + +GVVLV +K+  S LL+ S S EK++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    WK              L+ +Y   +S ++ + LAL+ L++
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGS-SVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 79/210 (37.62%), Postives = 117/210 (55.71%), Query Frame = 2
Query:   62 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 691
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 79/210 (37.62%), Postives = 117/210 (55.71%), Query Frame = 2
Query:   62 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 691
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 79/210 (37.62%), Postives = 117/210 (55.71%), Query Frame = 2
Query:   62 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 691
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.051e-35
Identity = 79/210 (37.62%), Postives = 117/210 (55.71%), Query Frame = 2
Query:   62 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 691
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.798e-35
Identity = 83/238 (34.87%), Postives = 136/238 (57.14%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            YD     FSPEGR++Q+EYA+EAI    +++GI + D V++  EK+V S L+  S S  K+ +ID H+   ++G+++DA IL++ ARV+AQ + + Y EPM VE    + CD    + + GG      RPFGVS L AG D+N G QL+ +DPSG Y  +             ++  + Y  +++ EEA  L +++L + M+   LT   +E+A   ++P    + Q+   E + +++
Sbjct:    8 YDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPS-SVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDEN-GPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVMEE-KLTKTSVEIA---IVPVSTGRLQIYDQEQIQRII 239          
The following BLAST results are available for this feature:
BLAST of CX069917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA7_TRYBB2.336e-3533.94Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA7B_ORYSJ2.336e-3540.00Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI2.336e-3540.00Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSMA_HALSA3.051e-3543.30Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS33.051e-3543.30Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSA2_RAT3.051e-3537.62Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE3.051e-3537.62Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN3.051e-3537.62Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN3.051e-3537.62Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA5_TRYBB6.798e-3534.87Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069917 ID=CX069917; Name=CX069917; organism=Citrus sinensis; type=EST; length=854bp
CCGAAGAGCATTACCTTNTGAGTAGGCTGACAAAGAATTACATTCATAAC
CAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAA
GGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGG
TAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAA
AGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATG
TACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGA
TGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACAT
ATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGT
GATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGT
TTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACA
TGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGT
GCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGA
TATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAA
CCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTT
TTCCTGATGCCTTCTGGCAAAGTGAAGTACCAAGTTTGCTCACCCGAAGC
TCTGAGCAAGTTGTTGGTGAAGCATGGAGTAACCCAACCTGCTGCTGAGA
CTTCTTGAATGAAGATCTTCCATGCTTTCATTATAACTTAATTTCAAAGC
AATT
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