CX069908

Overview
NameCX069908
Unique NameCX069908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL2_ARATH (4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 76/164 (46.34%), Postives = 105/164 (64.02%), Query Frame = 1
Query:    1 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VT   VVPP++LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + QGYG+TE   +  M   FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+GY N+  AT  TIDK GW+HTGD+G+ D D +L++VDR+KE
Sbjct:  289 VTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRLKE 452          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.896e-35
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 1
Query:   19 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VPP++LA+AK  +V K+DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  +FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+GY N+ ++T+ TID++GW+HTGD+G+ D D +L++VDR+KE
Sbjct:  282 VPPIVLAIAKSPVVDKYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPYEIKSGACGTVVRNAEMKIVDPETNASLPRNQRGEICIRGDQIMKGYLNDPESTRTTIDEEGWLHTGDIGFIDDDDELFIVDRLKE 439          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.782e-35
Identity = 74/164 (45.12%), Postives = 107/164 (65.24%), Query Frame = 1
Query:    1 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VT   +VPPL++ALAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + QGYG+TE   + +M   FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+ Y N+ +AT  TID++GW+HTGD+GY D D ++++VDR+KE
Sbjct:  299 VTIAALVPPLVIALAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLGFAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATSATIDEEGWLHTGDIGYVDEDDEIFIVDRLKE 462          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.451e-35
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:   19 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VPP++LA+AK  +V  +DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY N+ +AT  TIDK+GW+HTGD+G+ D D +L++VDR+KE
Sbjct:  286 VPPIVLAIAKSPIVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKE 443          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL2_SOLTU (4-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=4CL2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.426e-35
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:   19 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VPP++LA+AK  LV  +DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY N+ +AT  TI+K+GW+HTGD+G+ D D +L++VDR+KE
Sbjct:  284 VPPIVLAIAKSPLVHNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKE 441          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL1_SOLTU (4-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=4CL1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.426e-35
Identity = 75/158 (47.47%), Postives = 103/158 (65.19%), Query Frame = 1
Query:   19 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VPP++LA+AK  LV  +DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY N+ +AT  TI+K+GW+HTGD+G+ D D +L++VDR+KE
Sbjct:  284 VPPIVLAIAKSPLVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEATARTIEKEGWLHTGDIGFIDDDDELFIVDRLKE 441          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.100e-34
Identity = 74/158 (46.84%), Postives = 102/158 (64.56%), Query Frame = 1
Query:   19 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VPP++LA+AK  +V  +DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  +FA        G+ G +    E  IV  +T   LP N  GEI +RG  +M+GY N+ +AT  TIDK+GW+HTGD+GY D D +L++VDR+KE
Sbjct:  290 VPPIVLAIAKSTVVDNYDLSSVRTVMSGAAPLGKELEDAVRAKFPNAKLGQGYGMTEAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPETGSSLPRNHPGEICIRGDQIMKGYLNDPEATARTIDKEGWLHTGDIGYIDDDDELFIVDRLKE 447          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.437e-34
Identity = 77/164 (46.95%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    1 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VT   +VPP++LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M   FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+GY NN  AT  TIDK GW+HTGD+G  D D +L++VDR+KE
Sbjct:  296 VTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKE 459          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL_PINTA (4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.877e-34
Identity = 69/164 (42.07%), Postives = 107/164 (65.24%), Query Frame = 1
Query:    1 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VT   +VPP++L + K  +V ++D+SS++++ SGAAPLGKEL +   +  P A   QGYG+TE   +  M  +FA +      GS G +    +  I+  +T + LP NQ GEI +RGP +M+GY N+ ++T  TID++GW+HTGD+ Y D D ++++VDR+KE
Sbjct:  275 VTVAPIVPPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKE 438          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.877e-34
Identity = 73/164 (44.51%), Postives = 107/164 (65.24%), Query Frame = 1
Query:    1 VTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRN---IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            VT   +VPP+++ +AK   + + DLSS+++V SGAAP+GKEL +     +P+A + QGYG+TE   + +M  +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY NN +AT+ TIDK GW+HTGD+G+ D D ++++VDR+KE
Sbjct:  271 VTIAPLVPPIVVEMAKSDALDRHDLSSIRMVISGAAPMGKELQDIVHAKLPNAVLGQGYGMTEAGPVLSMCMAFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKE 434          
The following BLAST results are available for this feature:
BLAST of CX069908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
4CL2_ARATH2.896e-3546.344-coumarate--CoA ligase 2 OS=Arabidopsis thaliana ... [more]
4CL1_PETCR2.896e-3546.204-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL3_ARATH3.782e-3545.124-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CL1_TOBAC6.451e-3547.474-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CL2_SOLTU8.426e-3547.474-coumarate--CoA ligase 2 OS=Solanum tuberosum GN=... [more]
4CL1_SOLTU8.426e-3547.474-coumarate--CoA ligase 1 OS=Solanum tuberosum GN=... [more]
4CL_VANPL1.100e-3446.844-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CL1_ARATH1.437e-3446.954-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
4CL_PINTA1.877e-3442.074-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2... [more]
4CL5_ORYSJ1.877e-3444.51Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069908 ID=CX069908; Name=CX069908; organism=Citrus sinensis; type=EST; length=485bp
GTGACACACATATGGGTTGTTCCACCTCTTATTCTTGCATTGGCTAAGCA
TGGTTTGGTCAAGAAATTTGATCTTTCTTCATTGAAACTTGTTGGTTCTG
GTGCTGCTCCTTTGGGAAAGGAATTGATGGAGGAATGCGCAAAGAATGTA
CCTAGTGCAACAGTCATTCAGGGTTATGGTTTGACGGAAACTAGTGGTAT
TGCCACAATGGAGAATTCATTTGCAGGATCTCGAAATATTGGTTCAGCTG
GAGCACTTGCCCCAGGTGTTGAAGCCCTAATAGTCAGTGTGGATACTCAA
AAGCCTCTTCCTCCAAATCAGTTGGGGGAGATATGGCTACGAGGACCTAA
TATGATGCAAGGTTATTACAACAATGAACAAGCCACCAAGCTGACAATAG
ATAAAAAGGGTTGGGTACATACGGGTGATCTTGGATATTTTGATGGGGAT
GGCCAGCTATATGTTGTTGACCGAATCAAAGAGCT
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