CX069908

Overview
NameCX069908
Unique NameCX069908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.496e-11
Identity = 40/133 (30.08%), Postives = 66/133 (49.62%), Query Frame = 1
Query:   82 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            ++L+ +GAAP+   ++    +        +GYG TE +    +  S  G    G  GA  P     +V V+    L     GE+ ++G N+ +GY  +   T   +DK GW+HTGD+G +  +G L ++DR K
Sbjct:  429 VRLMITGAAPVSATVLT-FLRTALGCQFYEGYGQTECTAGCCL--SLPGDWTAGHVGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKK 558          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_LISIN (2-succinylbenzoate--CoA ligase OS=Listeria innocua GN=menE PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   79 SLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQAT-KLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            +++ V  G  P  K ++E C  +++P   ++Q +G+TET S I T+    A ++ IGS+G      E  I              GEI L+GP++  GY +NE+AT K  ID  GW  TGD+GY D +G L+V++R
Sbjct:  249 NVRTVLLGGGPANKAVLEICKQRDIP---LVQSFGMTETASQIVTLPPKDALNK-IGSSGKALFPAEVKIADD-----------GEILLKGPSITPGYLHNEKATAKAFID--GWFKTGDIGYLDEEGFLFVLER 366          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: BGML_DROME (Long-chain-fatty-acid--CoA ligase bubblegum-like OS=Drosophila melanogaster GN=CG4500 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.485e-11
Identity = 39/103 (37.86%), Postives = 53/103 (51.46%), Query Frame = 1
Query:  175 YGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            YG++ETSG  T+    +   N+ SAG    GV   I   D       N  GEI +RG  +  GY      T+ T+ + GW+H+GDLGY D  G L +  R+KE
Sbjct:  416 YGMSETSGAITLNVDIS---NLYSAGQACEGVTLKIHEPDC------NGQGEILMRGRLVFMGYLGLPDKTEETVKEDGWLHSGDLGYIDPKGNLIISGRLKE 509          
The following BLAST results are available for this feature:
BLAST of CX069908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
ACSL1_MOUSE6.496e-1130.08Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
MENE_LISIN8.485e-1136.302-succinylbenzoate--CoA ligase OS=Listeria innocua... [more]
BGML_DROME8.485e-1137.86Long-chain-fatty-acid--CoA ligase bubblegum-like O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069908 ID=CX069908; Name=CX069908; organism=Citrus sinensis; type=EST; length=485bp
GTGACACACATATGGGTTGTTCCACCTCTTATTCTTGCATTGGCTAAGCA
TGGTTTGGTCAAGAAATTTGATCTTTCTTCATTGAAACTTGTTGGTTCTG
GTGCTGCTCCTTTGGGAAAGGAATTGATGGAGGAATGCGCAAAGAATGTA
CCTAGTGCAACAGTCATTCAGGGTTATGGTTTGACGGAAACTAGTGGTAT
TGCCACAATGGAGAATTCATTTGCAGGATCTCGAAATATTGGTTCAGCTG
GAGCACTTGCCCCAGGTGTTGAAGCCCTAATAGTCAGTGTGGATACTCAA
AAGCCTCTTCCTCCAAATCAGTTGGGGGAGATATGGCTACGAGGACCTAA
TATGATGCAAGGTTATTACAACAATGAACAAGCCACCAAGCTGACAATAG
ATAAAAAGGGTTGGGTACATACGGGTGATCTTGGATATTTTGATGGGGAT
GGCCAGCTATATGTTGTTGACCGAATCAAAGAGCT
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