CX069908

Overview
NameCX069908
Unique NameCX069908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.556e-17
Identity = 57/160 (35.62%), Postives = 84/160 (52.50%), Query Frame = 1
Query:    4 THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            T I  V  L  AL  +   ++ D SSL L   G  P+ + + E   K +    +++GYGLTE + + ++ N +    + GS G   P  EA +V  D    + P Q GE+ +RGP +M GY+    AT   I K GW+HTGD+   D +G L +VDR K+
Sbjct:  301 TAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVK-LTGQYLLEGYGLTECAPLVSV-NPYDIDYHSGSIGLPVPSTEAKLVD-DDDNEVSPGQPGELCVRGPQVMLGYWQRPDATDEII-KNGWLHTGDIAVMDEEGFLRIVDRKKD 456          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_GEOKA (2-succinylbenzoate--CoA ligase OS=Geobacillus kaustophilus GN=menE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.645e-17
Identity = 59/147 (40.14%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   40 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            +A+ G  +  D     L+G G AP  + L+E C  K +P   V Q YG+TET S IAT+   ++ ++ +GSAG   P   A +  +   KP  P++ GEI ++GPN+ +GY+   +AT   I + GW  TGD+GY D DG LYV+DR
Sbjct:  245 VAELGEARYPDTFRCMLLGGGPAP--RPLLEACKEKGIP---VYQTYGMTETASQIATLAPEYSLTK-LGSAGK--PLFPAELCILKDGKPAAPHEAGEIVVKGPNVTKGYWQRPEATAQAI-RGGWFFTGDIGYLDEDGFLYVLDR 382          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_BACLD (2-succinylbenzoate--CoA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=menE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.645e-17
Identity = 58/131 (44.27%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   88 LVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            L+G G APL   L+EEC  K +P   V+Q YG+TET S IAT+   ++  + +GSAG   P   + I          P + GEI ++GP +M+GY  NE A K + +  GW  TGD+GYFD DG LYV+DR
Sbjct:  262 LLGGGPAPLS--LLEECKRKRLP---VVQSYGMTETCSQIATLAPEYSIEK-LGSAGK--PLFASSIKIEKNGTECQPGEHGEITVKGPTVMKGYLKNEAANKDSFND-GWFKTGDIGYFDDDGFLYVLDR 383          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_BACC7 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain AH187) GN=menE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.066e-17
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   76 SSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSG-IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            SSL+ +  G  P  K ++E C  K +P   V Q YG+TETS  I T+   +  ++ +GSAG   P  +  +        +P    GEI ++GPN+  GY+N E AT+ TI + GW+HTGDLGY D +G LYV+DR
Sbjct:  252 SSLRCMLLGGGPAPKPILETCVEKGIP---VYQTYGMTETSSQICTLSADYMLTK-VGSAGK--PLFQCRLRIEKDGVVVPAFTEGEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDLGYLDEEGFLYVLDR 379          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_BACC1 (2-succinylbenzoate--CoA ligase OS=Bacillus cereus (strain ATCC 10987) GN=menE PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.066e-17
Identity = 56/135 (41.48%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   76 SSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSG-IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            SSL+ +  G  P  K L+E C  K +P   V Q YG+TETS  I T+   +  ++ +GSAG   P  +  +        +P    GEI ++GPN+  GY+N E AT+ TI + GW+HTGD+GY D +G LYV+DR
Sbjct:  252 SSLRCMLLGGGPAPKPLLETCVEKGIP---VYQTYGMTETSSQICTLSADYMLTK-VGSAGK--PLFQCQLRIEKDGVVVPAFTEGEIVVKGPNVTGGYFNREDATRETI-QNGWLHTGDIGYLDEEGFLYVLDR 379          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_BACA2 (2-succinylbenzoate--CoA ligase OS=Bacillus amyloliquefaciens (strain FZB42) GN=menE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.035e-16
Identity = 56/130 (43.08%), Postives = 73/130 (56.15%), Query Frame = 1
Query:   88 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            L+G G APL   L+EEC +      V Q YGLTET S I T+   F+  + +GSAG      E  I       P  P + GEI ++GPN+M+GYY+ + A +      GW  TGDLGY D +G LYV+DR
Sbjct:  262 LLGGGPAPL--PLLEECRRK--QFPVFQSYGLTETCSQIVTLSPEFSMDK-LGSAGKPLFSCEIRIEK--DGNPCAPFEHGEITVKGPNVMKGYYHRDDANQAAFHN-GWFKTGDLGYLDDEGFLYVLDR 383          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_OCEIH (2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.765e-16
Identity = 58/154 (37.66%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   16 VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            +V  LI  L  H     F      L+G G AP  K L+E+   KN+P   V Q YG+TETS            + IGSAG      +  I   +      PNQ+GEI ++GP + +GYY   +  K  + +  W+HTGD+GY D  G LYVVDR
Sbjct:  243 MVQRLIKRLGNHHYPNDF---RCMLLGGGPAP--KSLLEQAKLKNIP---VFQSYGMTETSSQIVTLTPEDALKKIGSAGKPLFPAQLKIAHNENN----PNQIGEILVKGPMVTKGYYKRAETNK-EVFENNWLHTGDMGYLDEQGYLYVVDR 383          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: LCFA_SALTY (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhimurium GN=fadD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   19 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            V  L  AL  +   ++ D SSL L   G  P+   + E   K +    +++GYGLTE + + ++ N      + GS G   P  EA +V  D    + P + GE+ ++GP +M GY+    AT   I K GW+HTGD+   D DG L +VDR K+
Sbjct:  306 VNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQNVVAERWVK-LTGQYLLEGYGLTECAPLVSV-NPHDIDYHSGSIGLPVPSTEAKLVD-DDDNEVAPGEAGELCVKGPQVMLGYWQRPDATDEII-KDGWLHTGDIAVMDEDGFLRIVDRKKD 456          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: LCFA_SALTI (Long-chain-fatty-acid--CoA ligase OS=Salmonella typhi GN=fadD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 54/155 (34.84%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   19 VPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            V  L  AL  +   ++ D SSL L   G  P+   + E   K +    +++GYGLTE + + ++ N      + GS G   P  EA +V  D    + P + GE+ ++GP +M GY+    AT   I K GW+HTGD+   D DG L +VDR K+
Sbjct:  306 VNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQNVVAERWVK-LTGQYLLEGYGLTECAPLVSV-NPHDIDYHSGSIGLPVPSTEAKLVD-DDDNEVAPGEAGELCVKGPQVMLGYWQRPDATDEII-KDGWLHTGDIAVMDEDGFLRIVDRKKD 456          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: MENE_BACSU (2-succinylbenzoate--CoA ligase OS=Bacillus subtilis GN=menE PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.932e-16
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   88 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 474
            L+G G APL   L+EEC +      V Q YG+TET S I T+   F+  + +GSAG      E + +  D Q    P + GEI ++GPN+M+ Y+N E A + +  + GW+ TGDLGY D +G LYV+DR
Sbjct:  261 LLGGGPAPL--PLLEECREK--GFPVFQSYGMTETCSQIVTLSPEFSMEK-LGSAGKPLFSCE-IKIERDGQV-CEPYEHGEIMVKGPNVMKSYFNRESANEASF-QNGWLKTGDLGYLDNEGFLYVLDR 382          
The following BLAST results are available for this feature:
BLAST of CX069908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
LCFA_ECO573.556e-1735.63Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
MENE_GEOKA4.645e-1740.142-succinylbenzoate--CoA ligase OS=Geobacillus kaus... [more]
MENE_BACLD4.645e-1744.272-succinylbenzoate--CoA ligase OS=Bacillus licheni... [more]
MENE_BACC76.066e-1741.482-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACC16.066e-1741.482-succinylbenzoate--CoA ligase OS=Bacillus cereus ... [more]
MENE_BACA21.035e-1643.082-succinylbenzoate--CoA ligase OS=Bacillus amyloli... [more]
MENE_OCEIH1.765e-1637.662-succinylbenzoate--CoA ligase OS=Oceanobacillus i... [more]
LCFA_SALTY3.011e-1634.84Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
LCFA_SALTI3.011e-1634.84Long-chain-fatty-acid--CoA ligase OS=Salmonella ty... [more]
MENE_BACSU3.932e-1642.312-succinylbenzoate--CoA ligase OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069908 ID=CX069908; Name=CX069908; organism=Citrus sinensis; type=EST; length=485bp
GTGACACACATATGGGTTGTTCCACCTCTTATTCTTGCATTGGCTAAGCA
TGGTTTGGTCAAGAAATTTGATCTTTCTTCATTGAAACTTGTTGGTTCTG
GTGCTGCTCCTTTGGGAAAGGAATTGATGGAGGAATGCGCAAAGAATGTA
CCTAGTGCAACAGTCATTCAGGGTTATGGTTTGACGGAAACTAGTGGTAT
TGCCACAATGGAGAATTCATTTGCAGGATCTCGAAATATTGGTTCAGCTG
GAGCACTTGCCCCAGGTGTTGAAGCCCTAATAGTCAGTGTGGATACTCAA
AAGCCTCTTCCTCCAAATCAGTTGGGGGAGATATGGCTACGAGGACCTAA
TATGATGCAAGGTTATTACAACAATGAACAAGCCACCAAGCTGACAATAG
ATAAAAAGGGTTGGGTACATACGGGTGATCTTGGATATTTTGATGGGGAT
GGCCAGCTATATGTTGTTGACCGAATCAAAGAGCT
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