CX069908

Overview
NameCX069908
Unique NameCX069908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: LCFA_YERPE (Long-chain-fatty-acid--CoA ligase OS=Yersinia pestis GN=fadD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.199e-14
Identity = 53/160 (33.12%), Postives = 79/160 (49.38%), Query Frame = 1
Query:    4 THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            T I  V  L  AL  +      D S+L+L   G  P+ K + E+  + +    +++GYGLTE S + T  N +      GS G   P  +  +   D    +   + GE+W+RGP +M GY+    AT   + K GW+ TGD+   D DG L +VDR K+
Sbjct:  301 TAITGVNTLFNALLNNEEFTHLDFSTLRLSVGGGMPVQKAVAEKW-ETLTGKHLLEGYGLTECSPLVT-GNPYDLKHYSGSIGLPVPSTDVRLRD-DDGNDVELGKPGELWVRGPQVMLGYWQRPDATDDVL-KDGWLATGDIATMDEDGFLRIVDRKKD 456          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: FADK_ECOLI (Short-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadK PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   70 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            DLS+L+    G   + K++  EC +      ++  YG TE+S  A +      SR + + G  A GVE  +V  D +K LPP   GE   RGPN+  GY++  + T   +D++GW ++GDL   D  G + +  R K+
Sbjct:  301 DLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-DARKTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKD 435          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: LCF1_YEAST (Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyces cerevisiae GN=FAA1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.399e-13
Identity = 41/133 (30.83%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   82 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            L+ + +G +P+ ++  E     +    ++ GYGLTET    T+ +    +  +G AG L   V   +V V+       N  GE+W+ G N+   YY NE+ T   +   GW  TGD+G ++ +G L ++DR K
Sbjct:  427 LRYLLNGGSPISRDAQEFITNLI--CPMLIGYGLTETCASTTILDP--ANFELGVAGDLTGCVTVKLVDVEELGYFAKNNQGEVWITGANVTPEYYKNEEETSQALTSDGWFKTGDIGEWEANGHLKIIDRKK 555          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACBG1_RAT (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus norvegicus GN=Acsbg1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.827e-13
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  172 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            GYGL+E++G   M + +  +  + S+G + PG    +V+ D       + +GEI L G  +  GY N E  T   ID +GW+HTGD+G  D DG LY+  R+KE
Sbjct:  470 GYGLSESTGPHFMSSPY--NYRLYSSGRVVPGCRVKLVNQDA------DGIGEICLWGRTIFMGYLNMEDKTHEAIDSEGWLHTGDMGRLDDDGFLYITGRLKE 565          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: FAD11_MYCTU (Putative fatty-acid--CoA ligase fadD11 OS=Mycobacterium tuberculosis GN=fadD11 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.386e-13
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = 1
Query:   34 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            L L+K  L ++     L+   SGAAP+ KE +   A   +P A +   +G++E S +AT  +   G   +G+ G L PG++  I            + GE  +RGP +M+GY      T   ID  GW+HTGD+   D DG L VVDR KE
Sbjct:  286 LVLSK--LRERLGFGELRWALSGAAPIPKETLAFFAGIGIPIAEI---WGMSELSCVATASHPRDG--RLGTVGKLLPGLQGKIA-----------EDGEYLVRGPLVMKGYRKEPAKTAEAIDSDGWLHTGDVFDIDSDGYLRVVDRKKE 418          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACBG1_MOUSE (Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus musculus GN=Acsbg1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.386e-13
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  172 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            GYGL+E++G   M + +  +  + S+G + PG    +V+ D       + +GEI L G  +  GY N E  T   ID +GW+HTGD+G  D DG LY+  R+KE
Sbjct:  470 GYGLSESTGPHFMSSPY--NYRLYSSGRVVPGCRVKLVNQDA------DGIGEICLWGRTIFMGYLNMEDKTCEAIDSEGWLHTGDMGRLDADGFLYITGRLKE 565          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: FAT2_YEAST (Peroxisomal-coenzyme A synthetase OS=Saccharomyces cerevisiae GN=FAT2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.116e-13
Identity = 42/111 (37.84%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  154 SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKK-GWVHTGDLGYFDGDGQLYVVDRIKE 483
            +A V++ Y +TE S   T  N   G R  G+ G   P    +++  D    LPP ++GE+ +RG N+  GY NN +A K    K+  +  TGD GYFD +G L +  RIKE
Sbjct:  327 NAPVLEAYAMTEASHQMTSNNLPPGKRKPGTVGQ--PQGVTVVILDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKE 435          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.065e-13
Identity = 51/153 (33.33%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   28 LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            L+ A  KH    + DLSSL ++ +G   +   L+       +P A    GYG TE  GI+T      G     SAG    GV+  +    T + LP  ++GEI +  P + +GY +N +AT   + + GW  TGD GY D DG +++  R K+
Sbjct:  260 LLEAWEKH----QTDLSSLVILMTGGTKVPSSLISRYLDIGIPLA---HGYGSTEAWGISTWTPDM-GMDKAASAGKPVAGVKVKVEDPLTGEELPQGEIGEIVVHTPFLFKGYEDNPEATAKVL-QNGWFRTGDSGYVDEDGFIFITGRYKD 403          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: LCF1_SCHPO (Long-chain-fatty-acid--CoA ligase 1 OS=Schizosaccharomyces pombe GN=lcf1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 45/133 (33.83%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   94 GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            GS  +P  K  +     ++    ++ GYGLTE S  A ++N    + +  SAG+L P  E  +V  +         PP   GEIWLRGP++ +GY N ++  K +    GW  TGD+G    +G L ++DR K
Sbjct:  411 GSALSPDTKRFL-----SIVLCPMLIGYGLTEISAAAMVQNPACFNLD-DSAGSLLPCTEMKLVDCEEGNYNSHGHPPR--GEIWLRGPSLTRGYLNRDKENKESFTPDGWFRTGDVGELTPEGLLRIIDRKK 535          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACBG2_XENLA (Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Xenopus laevis GN=acsbg2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.638e-12
Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   97 SGAAPLGKELMEE-CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            +GAAP+ K+ +E   + N+P   V + YG++E+SG  T+  S   +  I S G +  G +  I   D+         GEI   G ++  GY N E  T  ++D++GW+H+GD+G  D +G LY+  RIKE
Sbjct:  456 TGAAPITKDTLEFFLSLNIP---VYELYGMSESSGPHTI--SLPDAFRITSCGKVISGCKTKIHQPDSDGS------GEILFWGRHVFMGYLNMEDKTHESLDEEGWLHSGDIGKHDENGFLYITGRIKE 574          
The following BLAST results are available for this feature:
BLAST of CX069908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
LCFA_YERPE8.199e-1433.13Long-chain-fatty-acid--CoA ligase OS=Yersinia pest... [more]
FADK_ECOLI1.071e-1333.33Short-chain-fatty-acid--CoA ligase OS=Escherichia ... [more]
LCF1_YEAST1.399e-1330.83Long-chain-fatty-acid--CoA ligase 1 OS=Saccharomyc... [more]
ACBG1_RAT1.827e-1338.46Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Rattus... [more]
FAD11_MYCTU2.386e-1335.76Putative fatty-acid--CoA ligase fadD11 OS=Mycobact... [more]
ACBG1_MOUSE2.386e-1338.46Long-chain-fatty-acid--CoA ligase ACSBG1 OS=Mus mu... [more]
FAT2_YEAST3.116e-1337.84Peroxisomal-coenzyme A synthetase OS=Saccharomyces... [more]
YDAB_BACSU9.065e-1333.33Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]
LCF1_SCHPO2.638e-1233.83Long-chain-fatty-acid--CoA ligase 1 OS=Schizosacch... [more]
ACBG2_XENLA2.638e-1235.38Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069908 ID=CX069908; Name=CX069908; organism=Citrus sinensis; type=EST; length=485bp
GTGACACACATATGGGTTGTTCCACCTCTTATTCTTGCATTGGCTAAGCA
TGGTTTGGTCAAGAAATTTGATCTTTCTTCATTGAAACTTGTTGGTTCTG
GTGCTGCTCCTTTGGGAAAGGAATTGATGGAGGAATGCGCAAAGAATGTA
CCTAGTGCAACAGTCATTCAGGGTTATGGTTTGACGGAAACTAGTGGTAT
TGCCACAATGGAGAATTCATTTGCAGGATCTCGAAATATTGGTTCAGCTG
GAGCACTTGCCCCAGGTGTTGAAGCCCTAATAGTCAGTGTGGATACTCAA
AAGCCTCTTCCTCCAAATCAGTTGGGGGAGATATGGCTACGAGGACCTAA
TATGATGCAAGGTTATTACAACAATGAACAAGCCACCAAGCTGACAATAG
ATAAAAAGGGTTGGGTACATACGGGTGATCTTGGATATTTTGATGGGGAT
GGCCAGCTATATGTTGTTGACCGAATCAAAGAGCT
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