CX069908

Overview
NameCX069908
Unique NameCX069908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACBG2_HUMAN (Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Homo sapiens GN=ACSBG2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.674e-12
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   97 SGAAPLGKELMEE-CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            SG APL +E  E   + ++P   +   YGL+E+SG  T+ N    +  + S G +  G + ++   +       + +GEI L G ++  GY  +E  T   ID +GW+H+GDLG  DG G LYV   IKE
Sbjct:  396 SGTAPLNQETAEFFLSLDIPIGEL---YGLSESSGPHTISNQ--NNYRLLSCGKILTGCKNMLFQQNK------DGIGEICLWGRHIFMGYLESETETTEAIDDEGWLHSGDLGQLDGLGFLYVTGHIKE 514          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.002e-11
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 1
Query:   31 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-----DTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            +L L     +K+     ++++ SG+APL  +  E   + V    V+QGYG +E  G    +       ++G+ G      E  +V V     D+   +   Q GE+ LRGP++  GYY +E+ T+    K GW HTGD+G ++ DG L +VDR K
Sbjct:  386 VLDLVFFSKIKQALGGKVRVILSGSAPLSFDT-EVFLRVVMCCCVLQGYGASEGCGGDACKR--LDDESVGTIGPPFASNEIKLVDVPELGYDSNGEV---QTGEVCLRGPSISSGYYKDEEKTREEF-KDGWFHTGDIGRWNRDGSLSIVDRKK 533          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSF2_MOUSE (Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.002e-11
Identity = 45/163 (27.61%), Postives = 77/163 (47.24%), Query Frame = 1
Query:    4 THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            T ++  P + + +        +D +S++      +P   EL+      +    ++  YG TE S +  M   E++    +  GS G + P  EA IV+V+T +    N  GE+++RG  +MQGY+   Q T  T+ +  W  TGD+   D  G   +V R K+
Sbjct:  351 TLLYGTPTMFVDILNQPDFSSYDFTSIRGGVIAGSPAPPELIRAIINKMNMKELVVVYGTTENSPVTFMNFPEDTL--EQKAGSVGRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKD 511          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-11
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = 1
Query:   82 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            ++++ +GAAP    ++    +      V +GYG TE +   T      G    G  GA  P     +V  +          GEI ++GPN+ +GY  +E  TK  +D  GW+HTGD+G +  +G L ++DR K
Sbjct:  428 VRMIVTGAAPASPTVLG-FLRAALGCQVYEGYGQTECTAGCTFTTP--GDWTSGHVGAPLPCNHIKLVDAEELNYWTSKGEGEICVKGPNVFKGYLKDEDRTKEALDSDGWLHTGDIGKWLPEGTLKIIDRKK 557          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSF2_DANRE (Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-11
Identity = 46/166 (27.71%), Postives = 79/166 (47.59%), Query Frame = 1
Query:    4 THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE 483
            T ++  P + + +     + KFDLSS++   +  +P   E+M +    +    ++ GYG TE S +     +F G       R I + G ++P  EA +V   T + +P    GE+ +RG  +M  Y+ +E+ T+  I K  W  TGD+   D      +  RIK+
Sbjct:  342 TFVYGTPTMYIDMLGQPDLAKFDLSSVRGGIAAGSPCPPEVMRKILNVMGIKEMVIGYGTTENSPV-----TFCGFPVDSAERKIVTVGCISPHTEAKVVDPTTGEIVPLGAQGELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAYCKIEGRIKD 502          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = 1
Query:   82 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            ++++ +GAAP    ++    +      V +GYG TE +   T      G    G  GA  P     +V  +          GEI ++GPN+ +GY  +E  TK  +D  GW+HTGD+G +  +G L ++DR K
Sbjct:  428 VRMIVTGAAPASPTVLG-FLRAALGCQVYEGYGQTECTAGCTFTTP--GDWTSGHVGAPLPCNHIKLVDAEELNYWTCKGEGEICVKGPNVFKGYLKDEDRTKEALDSDGWLHTGDIGKWLPEGTLKIIDRKK 557          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.233e-11
Identity = 40/133 (30.08%), Postives = 67/133 (50.38%), Query Frame = 1
Query:   82 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            ++L+ +GAAP+   ++    +        +GYG TE +    +  +  G    G  GA  P     +V V+    +     GE+ ++GPN+ QGY  +   T   +DK GW+HTGD+G +  +G L ++DR K
Sbjct:  428 VRLMVTGAAPVSATVLT-FLRAALGCQFYEGYGQTECTAGCCL--TMPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKK 557          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.809e-11
Identity = 40/133 (30.08%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   82 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            ++L+ +GAAP+   ++    +        +GYG TE +   ++  S  G    G  GA  P     +V V+    +     GE+ ++GPN+ +GY  +   T   +DK GW+HTGD+G +  +G L ++DR K
Sbjct:  428 VRLMVTGAAPVSATVLT-FLRAALGCQFYEGYGQTECTAGCSL--SVPGDWTAGHVGAPMPCNFIKLVDVEEMNYMAAMGEGEVCVKGPNVFKGYLKDPAKTAEALDKDGWLHTGDIGKWLPNGTLKIIDRKK 557          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   82 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIK 480
            ++++ +GAAP    ++    +      V +GYG TE +   T      G    G  GA  P     +V V+          GEI +RGPN+ +GY  +   TK  +D  GW+HTGD+G +   G L ++DR K
Sbjct:  428 VRMIVTGAAPASPTVLG-FLRAALGCQVYEGYGQTECTAGCTFTTP--GDWTSGHVGAPLPCNHIKLVDVEELNYWACKGEGEICVRGPNVFKGYLKDPDRTKEALDSDGWLHTGDIGKWLPAGTLKIIDRKK 557          
BLAST of CX069908 vs. ExPASy Swiss-Prot
Match: ACSL3_MOUSE (Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculus GN=Acsl3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.974e-11
Identity = 53/148 (35.81%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   79 SLKLVGSGAAPLG---KELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS------VDTQKPLPPNQLGEIWLRGPNMMQGYYNNEQATKLTI--DKKG--WVHTGDLGYFDGDGQLYVVDRIKE 483
            +++L+  G APL    +  M  C        V QGYGLTE++G  T+   +    N G  GA     E  + +       +T KP P    GEI + G N+  GYY NE  TK     D+ G  W+ TGD+G FD DG L ++DR K+
Sbjct:  444 NIRLLLCGGAPLSATTQRFMNICF----CCPVGQGYGLTESTGAGTITEVW--DYNTGRVGAPLVCCEIKLKNWEEGGYFNTDKPHPR---GEILIGGQNVTMGYYKNEAKTKTDFFEDENGQRWLCTGDIGEFDPDGCLKIIDRKKD 582          
The following BLAST results are available for this feature:
BLAST of CX069908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
ACBG2_HUMAN7.674e-1235.38Long-chain-fatty-acid--CoA ligase ACSBG2 OS=Homo s... [more]
FCSB_DICDI1.002e-1132.26Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]
ACSF2_MOUSE1.002e-1127.61Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSL6_RAT1.309e-1130.83Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSF2_DANRE1.309e-1127.71Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSL6_MOUSE2.233e-1130.83Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
ACSL1_HUMAN2.233e-1130.08Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL1_CAVPO3.809e-1130.08Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL6_HUMAN4.974e-1131.58Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL3_MOUSE4.974e-1135.81Long-chain-fatty-acid--CoA ligase 3 OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069908 ID=CX069908; Name=CX069908; organism=Citrus sinensis; type=EST; length=485bp
GTGACACACATATGGGTTGTTCCACCTCTTATTCTTGCATTGGCTAAGCA
TGGTTTGGTCAAGAAATTTGATCTTTCTTCATTGAAACTTGTTGGTTCTG
GTGCTGCTCCTTTGGGAAAGGAATTGATGGAGGAATGCGCAAAGAATGTA
CCTAGTGCAACAGTCATTCAGGGTTATGGTTTGACGGAAACTAGTGGTAT
TGCCACAATGGAGAATTCATTTGCAGGATCTCGAAATATTGGTTCAGCTG
GAGCACTTGCCCCAGGTGTTGAAGCCCTAATAGTCAGTGTGGATACTCAA
AAGCCTCTTCCTCCAAATCAGTTGGGGGAGATATGGCTACGAGGACCTAA
TATGATGCAAGGTTATTACAACAATGAACAAGCCACCAAGCTGACAATAG
ATAAAAAGGGTTGGGTACATACGGGTGATCTTGGATATTTTGATGGGGAT
GGCCAGCTATATGTTGTTGACCGAATCAAAGAGCT
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