CX069907

Overview
NameCX069907
Unique NameCX069907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            +LE +L+ HPEILD  V    D EAGE+P+A+VVR   S+L+ + V +++AKQVAP+KR+R+V F+ ++PKS +GK+LRR L
Sbjct:  490 DLEEVLIHHPEILDVAVTSAEDEEAGEIPVAFVVRRSGSNLSCKQVMEYVAKQVAPYKRVRKVVFVEAIPKSPAGKVLRRLL 571          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELE LL+SHP I DA V+   D  A EVP+A+V RS  S LTE+DV+ ++ KQV  +KR++ V FI  +PK+ SGKILR++L AK+
Sbjct:  479 ELEALLISHPSIDDAAVVAMKDEVADEVPVAFVARSQGSQLTEDDVKSYVNKQVVHYKRIKMVFFIEVIPKAVSGKILRKDLRAKL 564          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.099e-18
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = -1
Query:  351 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKV 608
            ELE +L++HP + D  V+P PD EAGE+P A VV +P ++  EED+  F+A  VA +K++R V F++S+PKS SGKI+RR L  K+
Sbjct:  451 ELEAILLTHPSVEDVAVVPLPDEEAGEIPAACVVINPKATEKEEDILNFVAANVAHYKKVRAVHFVDSIPKSLSGKIMRRLLRDKI 536          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18
Identity = 38/88 (43.18%), Postives = 66/88 (75.00%), Query Frame = -1
Query:  345 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRRELIAKVRA 608
            ELE +L++H  + DA V+P  D   GE+P+A+VV    S +T++++++++AKQV  +KRL ++ F++++PK+ SGKILR++L AK+ A
Sbjct:  447 ELEAMLIAHAAVADAAVVPMKDDSCGEIPVAFVVARDGSGITDDEIKQYVAKQVVFYKRLHKIFFVDAIPKAPSGKILRKDLRAKLAA 534          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.618e-17
Identity = 40/83 (48.19%), Postives = 63/83 (75.90%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFP-DAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            ELE LL++HP I DA V+    + E GE+P+A+V ++  S L+E+DV++F+AK+V  +K++R V F++ +PK+ SGKILR+EL
Sbjct:  471 ELEALLITHPSIADAAVVGKQIEPEIGEIPVAFVAKTEGSELSEDDVKQFVAKEVIYYKKIREVFFVDKIPKAPSGKILRKEL 553          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: 4CLL9_ORYSJ (4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-16
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            ELE +L+SHP + DA V   PD EAGEVP+A VVR   +   EE++  ++A++VA +KR+R +  ++++PKS SGKILRR+L
Sbjct:  462 ELEAVLLSHPSVEDAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSVSGKILRRQL 543          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.098e-13
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = -1
Query:  363 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINSVPKSASGKILRREL 608
            E+E +L SHP++ +AVVI  PD ++GE    YVV    S +TEED+ +   K +A +KR   +TF++ +PK+A+GK+LRR L
Sbjct:  427 EVEEVLYSHPDVKEAVVIGVPDPQSGEAVKGYVVPK-RSGVTEEDIMQHCEKHLAKYKRPAAITFLDDIPKNATGKMLRRAL 507          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: LUCI_LUCMI (Luciferin 4-monooxygenase OS=Luciola mingrelica PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = -1
Query:  339 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKI---LRRELIAKVRAKM 608
            ELE +L+ HP I DA V   PD +AGE+P A VV     ++TE+++  ++  QV   KRLR  V F++ VPK  +GKI   + RE++ K +AKM
Sbjct:  455 ELESVLLQHPNIFDAGVAGVPDPDAGELPGAVVVMEKGKTMTEKEIVDYVNSQVVNHKRLRGGVRFVDEVPKGLTGKIDAKVIREILKKPQAKM 548          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: LUCI_LUCLA (Luciferin 4-monooxygenase OS=Luciola lateralis PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = -1
Query:  339 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKI---LRRELIAKVRAKM 608
            ELE +L+ HP I DA V   PD  AGE+P A VV     S+TE++V  ++A QV+  KRLR  V F++ VPK  +GKI     RE++ K  AKM
Sbjct:  455 ELESVLLQHPNIFDAGVAGVPDPIAGELPGAVVVLEKGKSMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGKAIREILKKPVAKM 548          
BLAST of CX069907 vs. ExPASy Swiss-Prot
Match: LUCI_LUCCR (Luciferin 4-monooxygenase OS=Luciola cruciata PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = -1
Query:  339 ELEGLLVSHPEILDAVVIPFPDAEAGEVPIAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLR-RVTFINSVPKSASGKI---LRRELIAKVRAKM 608
            ELE +L+ HP I DA V   PD  AGE+P A VV     ++TE++V  ++A QV+  KRLR  V F++ VPK  +GKI     RE++ K  AKM
Sbjct:  455 ELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAKM 548          
The following BLAST results are available for this feature:
BLAST of CX069907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
4CLL3_ORYSJ2.893e-1952.444-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
4CL4_ARATH2.893e-1953.494-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CLL1_ARATH1.099e-1850.004-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CL5_ORYSJ1.436e-1843.18Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL1_ORYSJ4.618e-1748.19Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]
4CLL9_ORYSJ1.029e-1650.004-coumarate--CoA ligase-like 9 OS=Oryza sativa sub... [more]
LCFB_BACSU3.098e-1345.12Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
LUCI_LUCMI1.177e-1243.62Luciferin 4-monooxygenase OS=Luciola mingrelica PE... [more]
LUCI_LUCLA1.177e-1246.81Luciferin 4-monooxygenase OS=Luciola lateralis PE=... [more]
LUCI_LUCCR2.008e-1245.74Luciferin 4-monooxygenase OS=Luciola cruciata PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069907 ID=CX069907; Name=CX069907; organism=Citrus sinensis; type=EST; length=608bp
CTTAGATTGAACTTGCAGTAGGTTCTTTTTAACTATCTTCAGTAATGGAA
AGTAATAAATAATTCTTCAAAAAAACAAAAAAAGGAGCGTGTTGGCTAAA
ATAAATAGTGCTCTCATCAAATGCTTCCAATTAGCATTTCAATAAAACCA
AACTTTCTGAGCATTATCCCAATATAATCATCCTAAGTGCTGATATGGGA
ACCATTTATTAGATGATTAATTCTATAAGTTGTAGAATTTCCTATTTATC
CACTCTACCATACCATGAATGAATTTTCACCTCACTCGGAATTATAATAG
TTGGGATACTAGTTGAAAAGTGTAGCATTACTCTTTCACATTTTGGCTCG
TACTTTTGCTATGAGCTCTCTTCTAAGGATTTTCCCAGAAGCTGACTTGG
GAACGCTGTTTATGAATGTCACCCTTCTTAATCTTTTAAAAGGTGCAACC
TGTTTAGCAATAAACTTCTGAACATCTTCTTCAGTCAGTGAACTGTTGGG
TGATCGAACAACATATGCTATTGGGACCTCCCCAGCTTCAGCGTCAGGAA
ATGGAATAACAACAGCATCTAATATCTCAGGGTGAGAAACAAGCAGCCCC
TCAAGCTC
back to top