DR404105

Overview
NameDR404105
Unique NameDR404105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 32/84 (38.10%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  347 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            LV+F+A+WCGPC+M+  V++E+AG+Y G+     ++ D + + A  YE+ ++P +++FK+GE  + VVG  PKE     +++ L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_RHOSH (Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  284 SRAVVTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 565
            S   VT  +++  +  SD PV+V+F+A WCGPCR +   ++E++ EYAG+++   VN D +        ++ +P + LFKNG+     VG  PK
Sbjct:    2 STVPVTDATFDTEVRKSDVPVVVDFWAEWCGPCRQIGPALEELSKEYAGKVKIVKVNVDENPESPAMLGVRGIPALFLFKNGQVVSNKVGAAPK 95          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 31/84 (36.90%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  347 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            LV+F+A+WCGPC+M+  V++E+AG+Y G+     ++ D + + A  +E+ ++P +++FK+GE  + VVG  PKE     +++ L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 28/81 (34.57%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  323 ILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 565
            +L  D PV+++F+A WCGPCR    + +++A E +G++R   VNT+ +  ++  + I+++P +++FKNG+  + + G +PK
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPK 128          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 28/81 (34.57%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  323 ILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 565
            +L  D PV+++F+A WCGPCR    + +++A E +G++R   VNT+ +  ++  + I+++P +++FKNG+  + + G +PK
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPK 128          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 28/81 (34.57%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  323 ILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 565
            +L  D PV+++F+A WCGPCR    + +++A E +G++R   VNT+ +  ++  + I+++P +++FKNG+  + + G +PK
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPK 128          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 28/81 (34.57%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  323 ILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 565
            +L  D PV+++F+A WCGPCR    + +++A E +G++R   VNT+ +  ++  + I+++P +++FKNG+  + + G +PK
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPK 128          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 33/90 (36.67%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  296 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 565
            VT D++E  +L S+ PVLV+F+A WCGPCR +   ++ I  E+ G++    +N D +   A  Y + ++P + +++ GE  +T+VG  PK
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVVKTIVGAKPK 96          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 30/84 (35.71%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  347 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            LV+F+A+WCGPC+M+  V++E+A +Y G+     ++ D + + A  YE+ ++P +++FK+G+  + VVG  PKE     +++ L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 30/84 (35.71%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  347 LVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            LV+F+A+WCGPC+M+  V++E+A +Y G+     ++ D + + A  YE+ ++P +++FK+G+  + VVG  PKE     +++ L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of DR404105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
THIO_STAEQ4.196e-1438.10Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_RHOSH4.196e-1436.17Thioredoxin OS=Rhodobacter sphaeroides GN=trxA PE=... [more]
THIO_STAHJ1.221e-1336.90Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO2_SHIFL2.720e-1334.57Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI2.720e-1334.57Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL62.720e-1334.57Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO572.720e-1334.57Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]
THIO_STRCL3.552e-1336.67Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]
THIO_STAAW3.552e-1335.71Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU3.552e-1335.71Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E17 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404105 ID=DR404105; Name=DR404105; organism=Citrus sinensis; type=EST; length=758bp
GGGGAATTTCACTCTTCCACTTCTCCCACCTAACCAATAAAAACACACAC
GCACACTTATTCTCTGATCAAACAAACACTCTTCTTCAGTTATGGCTTCT
GTTTCCTCTTCATCGTCATCATCTTCTTGTTTCACTTCTGCCCATTTTGC
CATTCCACGCGTCTCTTCATTTCCTTCTCATACGCCCAACAAACTCTCAT
TTCCCTCTCATTTTTACGCCAAAAACGCTACCTTTAAGGCTCCAAACAGG
TCTCTTTCACTTAAGGTTCTCTGTGTACGTGAATCTAGAGCAGTGGTCAC
CAAAGACTCGTGGGAAAAGTCGATCCTGAACAGTGATACCCCTGTTCTCG
TTGAATTTTATGCGAGTTGGTGTGGACCGTGCAGGATGGTTCATCGGGTG
ATTGATGAGATTGCAGGAGAGTATGCTGGGAGACTTAGATGTTTTATGGT
CAATACGGACACAGACCTAACAATTGCTGAGGACTATGAAATTAAGGCTG
TGCCTGTAGTTTTGCTCTTCAAGAATGGAGAGAAACGCGAAACTGTGGTT
GGAACCATGCCGAAGGAGTTCTACATTGCTGCTATTGAGAGGGTTCTGAA
GTCATAAACATGATCTAATGGCTTGAAGATCCATTGAAGTCGATCAATTC
GTTTTAGGTGTCAAATGACCAGTATTGGCTGAATTTTCCATTGGGTCATG
ATTACTTTAGATGTACATCATCTAGATATTGCTTCCCAGGTACCAACACC
ACTGGTGC
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