DR404105

Overview
NameDR404105
Unique NameDR404105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 2
Query:  296 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPK 565
            +T  ++EK +L   + VLV+F+A WC PC+++  +++EIA EY  +++   +N + +   A  Y I+ +P +LLF   E   T VG + K
Sbjct:    7 LTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLFHGREVLATKVGAISK 96          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  344 VLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIER 592
            VLV+F+A WCGPCRM+  +++ +A E    +    +N D +   AE YE+ ++P ++LFK+G +   VVG   KEF    I +
Sbjct:   19 VLVDFFAEWCGPCRMLTPILENLAAELP-HVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINK 100          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 30/103 (29.13%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  296 VTKDSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVLKS 604
            +T   +E  +L ++ PVLV F+ASWCGPC+++  +I+  A  Y+ RL+   +  D + T  + Y+++ VP + L K  +  ++  G + K+  ++ ++  L +
Sbjct:    8 ITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN 110          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query:  314 EKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVG 553
            ++ IL  D  V+++FYA WCGPC+++   +DE+A EY+ R+    VN D +  I  +Y + ++P  +  K G   E  VG
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVG 92          
BLAST of DR404105 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 35/98 (35.71%), Postives = 51/98 (52.04%), Query Frame = 2
Query:  305 DSWEKSILNSDTPVLVEFYASWCGPCRMVHRVIDEIAGEYAGRLRCFMVNTDTDLTIAEDYEIKAVPVVLLFKNGEKRETVVGTMPKEFYIAAIERVL 598
            + + + ++ S  PV+V+F+A WCGPC+ +   ++E      G +    +N D    +A DY I AVP V  FKNGEK     G +  E     IE VL
Sbjct:   46 EDFTEKVIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSGVLDDEQLDDFIEDVL 143          
The following BLAST results are available for this feature:
BLAST of DR404105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
THIO_BUCAP3.324e-1134.44Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO_CHLPN4.342e-1138.55Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO2_ANASP7.406e-1129.13Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIOT_DROME9.673e-1136.25Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO2_CAEEL9.673e-1135.71Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E17 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404105 ID=DR404105; Name=DR404105; organism=Citrus sinensis; type=EST; length=758bp
GGGGAATTTCACTCTTCCACTTCTCCCACCTAACCAATAAAAACACACAC
GCACACTTATTCTCTGATCAAACAAACACTCTTCTTCAGTTATGGCTTCT
GTTTCCTCTTCATCGTCATCATCTTCTTGTTTCACTTCTGCCCATTTTGC
CATTCCACGCGTCTCTTCATTTCCTTCTCATACGCCCAACAAACTCTCAT
TTCCCTCTCATTTTTACGCCAAAAACGCTACCTTTAAGGCTCCAAACAGG
TCTCTTTCACTTAAGGTTCTCTGTGTACGTGAATCTAGAGCAGTGGTCAC
CAAAGACTCGTGGGAAAAGTCGATCCTGAACAGTGATACCCCTGTTCTCG
TTGAATTTTATGCGAGTTGGTGTGGACCGTGCAGGATGGTTCATCGGGTG
ATTGATGAGATTGCAGGAGAGTATGCTGGGAGACTTAGATGTTTTATGGT
CAATACGGACACAGACCTAACAATTGCTGAGGACTATGAAATTAAGGCTG
TGCCTGTAGTTTTGCTCTTCAAGAATGGAGAGAAACGCGAAACTGTGGTT
GGAACCATGCCGAAGGAGTTCTACATTGCTGCTATTGAGAGGGTTCTGAA
GTCATAAACATGATCTAATGGCTTGAAGATCCATTGAAGTCGATCAATTC
GTTTTAGGTGTCAAATGACCAGTATTGGCTGAATTTTCCATTGGGTCATG
ATTACTTTAGATGTACATCATCTAGATATTGCTTCCCAGGTACCAACACC
ACTGGTGC
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