DR404103

Overview
NameDR404103
Unique NameDR404103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.764e-26
Identity = 59/145 (40.69%), Postives = 86/145 (59.31%), Query Frame = 2
Query:   98 ATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            A +ST AK R+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   57 AKLSTSAK-RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.764e-26
Identity = 59/145 (40.69%), Postives = 86/145 (59.31%), Query Frame = 2
Query:   98 ATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            A +ST AK R+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   57 AKLSTSAK-RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.764e-26
Identity = 59/145 (40.69%), Postives = 86/145 (59.31%), Query Frame = 2
Query:   98 ATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            A +ST AK R+ ++   +  DPP   S  P+ +NI  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   57 AKLSTSAK-RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQ 200          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26
Identity = 55/152 (36.18%), Postives = 98/152 (64.47%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTA 556
            MS    +R+ ++   +QQD  AGI     +++I     +  GP+ TP++GG F + ++   DYP +PP + F ++++HPN+ +  G+ICLDIL++QWSP+Y + + L S+QSLLC P P++P +++ A+++ +N +++ R  RE     WT+
Sbjct:    1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTARE-----WTS 147          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            MS  A  RL ++ K  ++D P G+   P  N     N+M     I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  +F +++ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVR 149          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 58/149 (38.93%), Postives = 82/149 (55.03%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            MS  A  RL ++ K  ++D P G    P  N     N+M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  +   IQ LL +PN   PA +EA  ++ +N+ EY +R R
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFR 149          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 50/137 (36.50%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  122 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            KR++++ + L +DPP GI  AP ++N+  +   + GP  + ++GG F L L   ++YP  PP VRF+++++HPN+   G ICL  L+  WSP   +  +L SIQ+L+  PNP+ P +++ A+++ EN+ +     RE
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANARE 141          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 58/148 (39.19%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  113 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTA 556
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA L+ +N   + + ++E   +  T+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.143e-25
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  113 PAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTA 556
            P  KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+ +WS +YDV  IL SIQSLL +PN +SP N+ AA L+ +N   + + ++E   +  T+
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVTS 176          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25
Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  122 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            KRL ++   L      GIS  P+ +N+  W   I G   T ++   +KL+L+F   YP   PTV+FV+  FHPN+ + G+ICLDIL+++WS +YDV  IL S+QSLL +PN  SP N  AA L+ +N+  Y + + E
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELW-QNQTAYKKHLHE 168          
The following BLAST results are available for this feature:
BLAST of DR404103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UB2E3_MOUSE1.764e-2640.69Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN1.764e-2640.69Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN1.764e-2640.69Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC1_SCHPO2.303e-2636.18Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC9_PAGMA3.008e-2640.27SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_MESAU5.132e-2638.93SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UBC13_SCHPO5.132e-2636.50Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2C_MACFA8.753e-2639.19Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_HUMAN1.143e-2539.19Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_XENLA1.493e-2542.34Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E15 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404103 ID=DR404103; Name=DR404103; organism=Citrus sinensis; type=EST; length=680bp
GGGGGCCCAGATCTCTTCTTTCTCTAGAAGCTTCTTCTCTCATTCTCCCC
CCTCACCCCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCC
ACTATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCT
CCAGCAAGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACA
TCATGTTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGGGAC
GGAGGTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAA
ACCTCCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATG
CGGATGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATA
TATGATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCC
AAATCCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGA
ATAAACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGG
ACAGCCGACTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAA
TAAAAGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGT
ACTCCGTAATCAATCTGATTTCAGGTGCAT
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