DR404103

Overview
NameDR404103
Unique NameDR404103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  125 RLMRDFKRLQQDPPAGIS---------GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            R+ ++ K L  DPP G S         G+   +     +A I GP+DT +  G F L +Q  E YP +PP V F + ++HPNI   G ICLDIL    +  W P  +++ +LTS++ LL +PNP+     E +R +  N++ ++ + RE+ E+
Sbjct:   10 RMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEK 162          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 48/149 (32.21%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            M++P+K+R M   K +  D          ++++ ++     GP D+ + GG +K+ ++  E YP K P+V FV++++HPN+  + G++CLD++   WSP++D+  +  S +  LL  PNP+ P N EAA L   ++  Y  +V+E  E+
Sbjct:    1 MASPSKRREMDMMKLMMSDYKVDTV----NDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEK 145          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 49/149 (32.89%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            MS+P+K+R M   K +  D    +     ++ +  +     GP D+ ++GG +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA L   ++  Y +RV+E  E+
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVEMI----NDGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEK 145          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            MS+P+K+R M   K +  D              + +N    GP D+ + GG +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA L   ++  Y +RV+E  E+
Sbjct:    1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFN----GPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEK 145          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 49/133 (36.84%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  131 MRDFKRLQQD--------PPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSEN 502
            M DF R+Q++          +GI   P+ +N+      I GP  TP++GGTF++ +   + YP +PP ++F ++++HPNI +  G+ICLDIL++QWSP   +   L SIQ+LL  P P  P ++  A  + +N
Sbjct:    1 MIDFSRIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKN 133          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 50/149 (33.56%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            MS+P+K+R M   K +  D    +         + ++    GP D+ + GG +K+ ++ TE YP K P++ F ++++HPN+    GS+CLD++   WSP++D+  I    +  LL  PNP+ P N EAA L   +K  Y  +V+E  E+
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFH----GPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCER 145          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGI----SGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            A+ RL RD   L   P   +    S    D +      VI  PD+  ++ G+    L F E YP +PP V  + ++FHPNI   G++CL+IL+  WSP  D+ +I+T +  L  +PNPN P N +AA+L  E ++E+   VR
Sbjct:   28 ARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAG---ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            M+  A +R+ R+FK + +        I     D N       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAG---ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            M+  A +R+ R+FK + +        I     D N       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAG---ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            M+  A +R+ R+FK + +        I     D N       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
The following BLAST results are available for this feature:
BLAST of DR404103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UBC37_ARATH1.107e-2034.64Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC6_ARATH2.467e-2032.21Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC5_ARATH4.208e-2032.89Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC4_ARATH4.208e-2033.56Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC27_ARATH4.208e-2036.84Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC4_WHEAT7.177e-2033.56Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_YEAST9.374e-2036.62NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBE2K_MOUSE1.599e-1933.56Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.599e-1933.56Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.599e-1933.56Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E15 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404103 ID=DR404103; Name=DR404103; organism=Citrus sinensis; type=EST; length=680bp
GGGGGCCCAGATCTCTTCTTTCTCTAGAAGCTTCTTCTCTCATTCTCCCC
CCTCACCCCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCC
ACTATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCT
CCAGCAAGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACA
TCATGTTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGGGAC
GGAGGTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAA
ACCTCCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATG
CGGATGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATA
TATGATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCC
AAATCCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGA
ATAAACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGG
ACAGCCGACTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAA
TAAAAGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGT
ACTCCGTAATCAATCTGATTTCAGGTGCAT
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