DR404103

Overview
NameDR404103
Unique NameDR404103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 41/122 (33.61%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  224 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD*KSNESTG 583
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++     EY ++++E +++  T +    +  G
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEG 160          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 41/122 (33.61%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  224 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD*KSNESTG 583
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++     EY ++++E +++  T +    +  G
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEG 160          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 41/122 (33.61%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  224 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD*KSNESTG 583
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA ++     EY ++++E +++  T +    +  G
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEALKEQEEG 160          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 43/142 (30.28%), Postives = 83/142 (58.45%), Query Frame = 2
Query:  107 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            ++ A+ R+ +D   L   P    +  P  N+++ +  +I  PD+  +  G F    +   +YP++PP V+  ++++HPNI  DG++CL+IL+  W+P+ ++ +I+  +Q L  +PNP  P N EAA +   N+R++   V++
Sbjct:   24 ASAAQLRIQKDINELNL-PNTCATDFPDPNDLLNFKLII-SPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKK 163          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 43/142 (30.28%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  107 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            + PA+ R  +D   ++   P G + + +D N +L   +   P D  +   TF+ T+     YP  PP V   + ++HPNI  +G +CL+IL+  W P+ ++  ++  + +L  +PNP+ P N +AA+L  +NK+ +   VR+
Sbjct:   75 ANPAELRAQKDIDEMEV--PTGCAVSFKDTNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQ 214          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 51/140 (36.43%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  122 KRLMRDFKRLQQDPPAGIS--GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF-SENKREYNRRVR 529
            KRL +++   Q    +G+       D ++  W AVI GP +TP++GG + L +   E YP  PP+V F +++ HPNI + +G +C+DIL+  WSP + + +   +I SLL + + +SP N +AA+L  + +K  YN  VR
Sbjct:    6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVR 145          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 44/136 (32.35%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  179 GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            G+ ++ +  +W+       D+ + G   K  ++F   YP +PPT++FVS+MFHPNIY DG +C+ IL+              ++W+P+ ++  I+ SI  +L  PN +SPAN +A+ ++ +N  EY + V  I  +
Sbjct:   58 GSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIARE 193          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 48/132 (36.36%), Postives = 78/132 (59.09%), Query Frame = 2
Query:  128 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 514
            L RDF  L+++   GI+  P   ++M W   I G  ++ W G  F+LT+ FT +Y   PP V+FV+  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+ ++++  Y
Sbjct:    9 LQRDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLY 140          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 64/204 (31.37%), Postives = 101/204 (49.51%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPP---AGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTV---------------RFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD*KS------NESTGRLCCRNKR*KLGLVWLVCS 640
            MS  A  R+ R  K +        AGI    ++NN+M     I GP+ TP+ GGTF++ +   E YP +PP V               +FV+R++HPNI +  G+ICLDIL+++W+    +  +L S+Q++LC P P+ P ++  A+ F  N   +      +   S+ A+ K       N   GRL     R    +V+L C+
Sbjct:   15 MSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINNYPMFT--ATAVYWTSYFANSKKDVEPDFNRKVGRLIEMGIRETEAIVYLSCN 216          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 42/140 (30.00%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  110 TPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            T A+ R+ +D   L   P    +  P   +IM +   +  PD+  + GG F+ +     ++P++PP V+ + +++HPNI  +G++CL+IL+  W P+  + A++  +Q L  +PN + P N +AA   + N+ E+ R V+
Sbjct:   23 TAAQLRVQKDLSELSL-PSTMKTHFPSAEDIMNFELTV-RPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
The following BLAST results are available for this feature:
BLAST of DR404103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UBE2H_MOUSE2.088e-1933.61Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN2.088e-1933.61Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN2.088e-1933.61Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC12_DROME2.088e-1930.28NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_DICDI4.652e-1930.28NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC16_SCHPO1.036e-1836.43Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
Y1A1_ENCCU1.354e-1832.35Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBE2U_MACFA1.354e-1836.36Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC21_CAEEL1.354e-1831.37Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBC12_YARLI3.015e-1830.00NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E15 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404103 ID=DR404103; Name=DR404103; organism=Citrus sinensis; type=EST; length=680bp
GGGGGCCCAGATCTCTTCTTTCTCTAGAAGCTTCTTCTCTCATTCTCCCC
CCTCACCCCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCC
ACTATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCT
CCAGCAAGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACA
TCATGTTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGGGAC
GGAGGTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAA
ACCTCCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATG
CGGATGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATA
TATGATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCC
AAATCCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGA
ATAAACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGG
ACAGCCGACTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAA
TAAAAGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGT
ACTCCGTAATCAATCTGATTTCAGGTGCAT
back to top