DR404103

Overview
NameDR404103
Unique NameDR404103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 41/141 (29.08%), Postives = 78/141 (55.32%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 532
            A  R++++ + LQ+ PP  +     D+ N+++W+A++  PD  P+    F L + F  +YP KPP ++F ++++HPN+  +G ICL I+ ++ W P      +L ++  L+  PN   P   + A L ++N   + +   E
Sbjct:    3 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 142          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 39/145 (26.90%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            A +RLM++ + +++           D  N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 39/145 (26.90%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            A +RLM++ + +++           D  N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 39/145 (26.90%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            A +RLM++ + +++           D  N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 39/145 (26.90%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            A +RLM++ + +++           D  N++ W  +I  PD+ P+D G F++ + F  +YP KPP + F ++++HPNI   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +   E  ++
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 51/155 (32.90%), Postives = 80/155 (51.61%), Query Frame = 2
Query:   95 NATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQN----QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVR 529
            N   ST    R+ RD   + ++PP G+   P  +++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL       WSP   ++++L SIQSL+ + P  N P   +     S + + YN  +R
Sbjct:   52 NERASTQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIR 204          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 48/136 (35.29%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFK---RLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSE 499
            M+  A  R+ R+FK   R ++     I     +++       I GP DTP++GG F L ++  E YP  PP VRF++R++HPNI +  G+ICLDIL++ W+    +  +L S+Q+LL    P+ P ++  A  F +
Sbjct:    1 MANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKD 136          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 40/145 (27.59%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISG-APQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            A KR+ ++ + LQ++ P  +     +++N+++W+A++  P+  P++   F+L + F  +YP +PPTV+F +R++HPN+  DG +CL I+ +  W        +L ++  L+  P P  P   E A   +++   +++  +E   Q
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQ 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 42/145 (28.97%), Postives = 77/145 (53.10%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 544
            A KR+ ++   L ++ P  +     D+ N+++W+ ++  PD  P+    F L + F  +YP KPPT+RF ++++HPNI  DG +CL ++  + W P      +L ++  L+  PN   P   E A L +++   + ++  E   Q
Sbjct:    3 ASKRVAKELDDLSKELPPYLRHLSSDDANVLVWHMLLL-PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQ 146          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 50/155 (32.26%), Postives = 79/155 (50.97%), Query Frame = 2
Query:   95 NATMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSR-----MFHPNIYADGSICLDILQN----QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVR 529
            N   S     R+ RD   + ++PP G+   P  +++   +A+I GP DTP++GG F    +   DYP  PP V+ ++       F+PN Y +G +CL IL       WSP   ++++L SIQSL+ + P  N P   +     S + + YN  +R
Sbjct:   52 NERASNQCVLRIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIR 204          
The following BLAST results are available for this feature:
BLAST of DR404103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UB2L6_HUMAN1.955e-1729.08Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UB2L3_MOUSE2.553e-1726.90Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.553e-1726.90Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN2.553e-1726.90Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2L3_PONAB3.334e-1726.90Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBE2Z_XENLA5.687e-1732.90Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBCD4_DROME5.687e-1735.29Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UB2L6_BOVIN7.427e-1727.59Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UB2L6_RAT1.655e-1628.97Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBE2Z_XENTR2.161e-1632.26Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E15 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404103 ID=DR404103; Name=DR404103; organism=Citrus sinensis; type=EST; length=680bp
GGGGGCCCAGATCTCTTCTTTCTCTAGAAGCTTCTTCTCTCATTCTCCCC
CCTCACCCCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCC
ACTATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCT
CCAGCAAGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACA
TCATGTTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGGGAC
GGAGGTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAA
ACCTCCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATG
CGGATGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATA
TATGATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCC
AAATCCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGA
ATAAACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGG
ACAGCCGACTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAA
TAAAAGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGT
ACTCCGTAATCAATCTGATTTCAGGTGCAT
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