DR404103

Overview
NameDR404103
Unique NameDR404103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 40/135 (29.63%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  125 RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 529
            RL +D   L       IS     N++M +   I  PD+  +  G F  + Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L  +PN   P N EAA +  +N + +   VR
Sbjct:   35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTI-KPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  116 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 442
            A KRL +++K + ++PP  I   P ++NI+ W+ +I GP DTP+ GG +  TL F  DYP KPP +R +  +  F PN      +CL   D   + W+P + V+ IL  + S +
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTILNGLLSFM 115          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 2
Query:  119 KKRLMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARLFSENKRE 511
            +KRL ++   LQ DPPAG  ++     N I  W   + G   T ++G  F+L  +F+  YP + P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS   +  ++N ++
Sbjct:    5 QKRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVKTCNKNPKK 141          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 38/128 (29.69%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  107 STPAKKRLMRDFKRLQQDPPAGISGA--PQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 484
            ++PA+ R+ +D   L+      +       +N + L       P++  + GG F+ ++ F + YP +PPTV+ ++ ++HPNI   G+ICL++L+  WSP+ D+  ++  +  L  +PN + P N +AA
Sbjct:   28 ASPAQLRVEKDLATLELPTTVTLDTKCLGSENKVYLR----ISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  119 KKRLMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARLFSENKRE 511
            +KRL ++   LQ DPP G  ++     N+I  W   + G   T ++G  F+L  +F+  YP   P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS   R  ++N ++
Sbjct:    5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKK 141          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  119 KKRLMRDFKRLQQDPPAG--ISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARLFSENKRE 511
            +KRL ++   LQ DPP G  ++     N+I  W   + G   T ++G  F+L  +F+  YP   P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS   R  ++N ++
Sbjct:    5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKK 141          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  101 TMSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 442
            T+S  A  RL ++    Q +PP G      DN +  W   + G   T +   T++L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V++I  SI S+L
Sbjct:   11 TLSKIATNRLQKELVEWQMNPPTGFKHKVTDN-LQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  104 MSTPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL-CDPNPNSPANSE 478
            +S  A  RL ++    Q +PP G      DN +  W   + G   T +   T++L ++F E YP + P V FVS    HP+IY++G ICLDIL + WSP   V ++  SI S+L   P    PA+++
Sbjct:   12 LSKIACNRLQKELSEWQLNPPTGFRHKVTDN-LQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADND 137          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = 2
Query:  107 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 442
            S  A KRL +++K +  +PP  I  AP ++NI+ W+ VI GP  TP++ G +  TL F  DYP  PP +R ++    PN     +  +CL   D     W+P + V  IL  + S +
Sbjct:    3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMIT----PNGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFM 115          
BLAST of DR404103 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  107 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 442
            S  A KRLM+++  LQ++P   +   P   NI+ W+ +I GP DTP++GG +  TL F  DYP KPP +R +  S  F  N      +CL   D     W+P + V+ IL  + S +
Sbjct:    3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNT----RLCLSFSDFHPKSWNPSWMVSTILVGLVSFM 115          
The following BLAST results are available for this feature:
BLAST of DR404103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UB12L_ARATH5.323e-1529.63Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC6_YEAST6.952e-1536.84Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBE2W_DANRE1.549e-1433.58Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBC12_ASHGO2.023e-1429.69NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBE2W_MOUSE3.450e-1433.58Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN3.450e-1433.58Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC16_ARATH4.506e-1437.39Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC15_ARATH4.506e-1436.22Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC6_KLULA7.686e-1435.04Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_SCHPO1.004e-1336.75Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E15 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404103 ID=DR404103; Name=DR404103; organism=Citrus sinensis; type=EST; length=680bp
GGGGGCCCAGATCTCTTCTTTCTCTAGAAGCTTCTTCTCTCATTCTCCCC
CCTCACCCCCTCTGCAAAAGCCGCTTCTCAGTTTTGCTCTCTAAAACGCC
ACTATGTCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCT
CCAGCAAGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACA
TCATGTTATGGAACGCCGTTATTTTTGGGCCTGATGATACTCCCTGGGAC
GGAGGTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAA
ACCTCCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATG
CGGATGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATA
TATGATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCC
AAATCCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGA
ATAAACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGG
ACAGCCGACTAAAAGTCCAATGAAAGCACCGGCCGGTTATGCTGTAGAAA
TAAAAGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTCGTGT
ACTCCGTAATCAATCTGATTTCAGGTGCAT
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