DR404100

Overview
NameDR404100
Unique NameDR404100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_DROME (Transcription elongation factor SPT4 OS=Drosophila melanogaster GN=spt4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  232 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPE 477
            LRACL C LVK++DQF   GCENC  F +M  + + V D T+ NF+GII++  PT SW A+W R+ RF  G Y ++VS  LP+
Sbjct:   13 LRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQ 95          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT42_MOUSE (Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.164e-18
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  208 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 516
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GI ++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGINAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEEL (Transcription elongation factor SPT4 OS=Caenorhabditis elegans GN=spt-4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.163e-16
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  232 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 531
            LRACL C LVK+ + F++ GCENC     +  D E+V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS  LP ++ +  +   V+Y P +R
Sbjct:   12 LRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4_ASPFU (Transcription elongation factor spt4 OS=Aspergillus fumigatus GN=spt4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.536e-16
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  232 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 522
            LRAC+ C LV+ + +F   GC NC     +  +++ + +CT+  F G+I++ DP+ SW ARW R+  +V G Y + V+ +LP+D+    ED  V+Y+P
Sbjct:   15 LRACMVCSLVQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEGLITLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4H_CAEBR (Transcription elongation factor SPT4 OS=Caenorhabditis briggsae GN=spt-4 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.193e-15
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  232 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 531
            LRACL C L+K+ D F+  GCENC     +  D E+V DCT+ N++G+I+ M    SW  +W ++ R V G Y ++VS +LP ++ +  +   V+Y   +R
Sbjct:   12 LRACLLCSLIKSVDAFQTDGCENCDEVLHLKGDEEKVYDCTSANYDGMIAAMSNDDSWVCKWQKMQRRVKGIYAISVSGSLPSNVVSDLKSMGVRYKANQR 112          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  265 TYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 522
            T  +F+  GC NC  F  +    +++  CT+  F G+I++ +PT+SW A++ R+  +VPG Y + VS  LP+D+++  EDE R+QY+P
Sbjct:    2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4_ASHGO (Transcription elongation factor SPT4 OS=Ashbya gossypii GN=SPT4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.166e-14
Identity = 31/86 (36.05%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  235 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 492
            RAC+ C +V+T ++F   GC NC     +E     ++CT+P+F G++ +  PT+SW A+W+ + ++VPG Y + V   LP ++ +L
Sbjct:    5 RACMLCGIVQTTNEFTRDGCPNCQGI-FEEASVSAIECTSPSFEGLVGMCKPTKSWVAKWISVEQYVPGMYAIKVDGRLPVEVVDL 89          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4_KLULA (Transcription elongation factor SPT4 OS=Kluyveromyces lactis GN=SPT4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  235 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 492
            RAC+ C LV++  +F  +GC NC     +E     V+CT+P+F G++ +  P+RSW ARW+ I  ++PG Y + +   LP ++  L
Sbjct:    5 RACMLCGLVQSTAEFNRNGCPNCQSI-FEEAGVSAVECTSPSFEGLVGMCKPSRSWVARWMSIDSYIPGMYAVKIDGRLPIEVTEL 89          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4_CRYNE (Transcription elongation factor SPT4 OS=Cryptococcus neoformans GN=SPT4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.052e-13
Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  211 PTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 522
            P S   ELRACL C ++++ + F   GC NC    +M    ERV +CT+  ++G+I++++P+ SW ARW RI + + G Y + V+   P+D+ +  E     Y P
Sbjct:    3 PKSGRAELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIEPSESWVARWQRIDKRMRGIYAVRVTGRAPQDVIDAIEARGGVYRP 107          
BLAST of DR404100 vs. ExPASy Swiss-Prot
Match: SPT4_CANGA (Transcription elongation factor SPT4 OS=Candida glabrata GN=SPT4 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.018e-12
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  235 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNL 492
            RAC+ C +V+T ++F   GC NC     +E     ++CT+P+F G++ +  PT+SW A+WL +   +PG Y + V   LP ++  L
Sbjct:    5 RACMLCGIVQTTNEFGRVGCPNCQGI-FEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDANIPGMYAVKVDGRLPPEVVEL 89          
The following BLAST results are available for this feature:
BLAST of DR404100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SPT4H_DROME3.614e-1850.60Transcription elongation factor SPT4 OS=Drosophila... [more]
SPT42_MOUSE6.164e-1841.35Transcription elongation factor SPT4 2 OS=Mus musc... [more]
SPT4H_CAEEL1.163e-1639.60Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4_ASPFU7.536e-1637.76Transcription elongation factor spt4 OS=Aspergillu... [more]
SPT4H_CAEBR2.193e-1538.61Transcription elongation factor SPT4 OS=Caenorhabd... [more]
SPT4_GIBZE3.166e-1438.64Transcription elongation factor SPT4 OS=Gibberella... [more]
SPT4_ASHGO3.166e-1436.05Transcription elongation factor SPT4 OS=Ashbya gos... [more]
SPT4_KLULA9.212e-1437.21Transcription elongation factor SPT4 OS=Kluyveromy... [more]
SPT4_CRYNE2.052e-1336.19Transcription elongation factor SPT4 OS=Cryptococc... [more]
SPT4_CANGA1.018e-1236.05Transcription elongation factor SPT4 OS=Candida gl... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404100 ID=DR404100; Name=DR404100; organism=Citrus sinensis; type=EST; length=752bp
GGGGATACTAAAACTACAGTTGCAATGAAATTACAAGAATAACACCGATT
CCGGATTACCAGCAGCTTCCGAGCATTCGTCGTCGTGTCTTCTCTGGAAC
TCTCTTACTAGCCCTTAAAAGATCAAGGTCTCTGTCATCAAGAGACGAAA
CGACTTACAGATATTGTCGGGTGCCGCGAGAGAACAATGGGAAGCGCACC
GGCATAAATTCCAACAAGCTTCGGGCATGAGCTGAGAGCTTGCCTCCGTT
GTCGGCTTGTCAAAACCTATGATCAGTTTAGAGAATCGGGATGCGAGAAC
TGTCCCTTCTTCAAGATGGATGAAGACCACGAGCGTGTTGTTGATTGTAC
TACCCCTAATTTTAATGGCATTATATCAGTCATGGATCCAACTAGAAGCT
GGGCTGCTCGCTGGTTGCGAATTGGAAGATTTGTCCCTGGTTGTTATACT
CTTGCTGTCTCAGAAGCCCTACCTGAGGACTTGCAGAACTTATGTGAAGA
CGAGCGCGTGCAATATGTGCCGCCAAAACGTTAATGACAGTTTGAGCAGT
GCATTGTCTGTAAAGATTATATCTGTTTCGGGTTACTTCGGAGATGACAT
GTTTAACGATTATATGCAACTGTAGCTGCTAATGTTGACTTGAATTTCTT
GTGCCCAATGCTTGTGTAGTAATCCTATTTTATGTTTGTAACTTGTATGC
TGCGTTTTGATTTTTTAATGGAGTTCTAGTAAAAAAAAAAAAAAAANNNA
AA
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