DR404097

Overview
NameDR404097
Unique NameDR404097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:409..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.612e-92
Identity = 162/190 (85.26%), Postives = 169/190 (88.95%), Query Frame = 2
Query:  155 DGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLA
Sbjct:    3 EGGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLA 192          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.451e-85
Identity = 162/223 (72.65%), Postives = 174/223 (78.03%), Query Frame = 2
Query:   68 ATSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +T AI  +A AG            +VG    GRITMR+TV     +A  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLA
Sbjct:    4 STMAISSTAMAGTPI---------KVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLA 217          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.201e-85
Identity = 160/221 (72.40%), Postives = 179/221 (81.00%), Query Frame = 2
Query:   68 ATSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            AT A+   +FAGQ A++ S        ++  GRITMR+ V KSAP S  WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSASE---ISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 220          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.460e-85
Identity = 154/221 (69.68%), Postives = 177/221 (80.09%), Query Frame = 2
Query:   68 ATSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            A +A+  +A AGQ+ ++  NE  R+V      R+TMRRTV  +  S  IWYG DRPK+LGPFS +TPSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLGALGC+ PE+L+K+GVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDPD FAELKVKE+KNGRLA
Sbjct:    3 AATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLA 223          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.623e-84
Identity = 157/223 (70.40%), Postives = 175/223 (78.48%), Query Frame = 2
Query:   68 ATSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +T A+  S FAG+ A++ S       G    GR+TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLA
Sbjct:    4 STMALSSSTFAGK-AVKLSPSSSEITG---NGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 222          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.623e-84
Identity = 155/221 (70.14%), Postives = 176/221 (79.64%), Query Frame = 2
Query:   68 ATSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            AT A+   +FAGQ A++ S       G    GR++MR+TV    A  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:    4 ATMALSSPSFAGQ-AVKLSPSAPEITG---NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 220          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 6.037e-84
Identity = 155/223 (69.51%), Postives = 172/223 (77.13%), Query Frame = 2
Query:   68 ATSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            AT AI  S+FAG+     S+       +   G+ TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLA
Sbjct:    4 ATMAISSSSFAGKAVNVPSSS-----QITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLA 221          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.345e-83
Identity = 158/222 (71.17%), Postives = 174/222 (78.38%), Query Frame = 2
Query:   65 MATS-AIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            MATS A   S F+GQ  L+  NE  R+VG  +  R+ M      AP  SIWYG DRP YLGPFS   PSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCV PE+L+KNGVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWACQV+LMG VEGYR+                +FDPLGLADDP+ FAELKVKELKNGRLA
Sbjct:    1 MATSTAALTSTFSGQQ-LKPVNELSRKVGAGEA-RVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLA 220          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.757e-83
Identity = 155/223 (69.51%), Postives = 176/223 (78.92%), Query Frame = 2
Query:   68 ATSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            AT A+  S+FAG+ A++ S       G    G++TMR+TV  A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVK +KNGRLA
Sbjct:    4 ATMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLA 222          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.913e-83
Identity = 151/222 (68.02%), Postives = 171/222 (77.03%), Query Frame = 2
Query:   71 TSAIQQSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            T A+  S+FAG+     S+       +   G++TMR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:    5 TMALSSSSFAGKAVKLSSSSSE----ITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 222          
The following BLAST results are available for this feature:
BLAST of DR404097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB25_SOLLC4.612e-9285.26Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_MAIZE2.451e-8572.65Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_SOLLC3.201e-8572.40Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2_PHYPA5.460e-8569.68Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2G_SOLLC4.623e-8470.40Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB22_TOBAC4.623e-8470.14Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB24_PETSP6.037e-8469.51Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_POLMU1.345e-8371.17Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB25_TOBAC1.757e-8369.51Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_PETSP3.913e-8368.02Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404097 ID=DR404097; Name=DR404097; organism=Citrus sinensis; type=EST; length=726bp
GGGGATCTTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTT
TCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCT
GGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAGGGTTGGAGT
TGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCC
AGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCT
GAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTG
GGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTG
AGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGC
GTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGT
TTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATC
TTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCC
TGCCAGGTTGTGCTTATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGG
TCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACC
CACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAG
GAGCTCAAGAATGGCCGTCTGGCTAT
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