DR404097

Overview
NameDR404097
Unique NameDR404097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:409..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 63/156 (40.38%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  260 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            PSYL G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLA 199          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.052e-19
Identity = 67/189 (35.45%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  161 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            GR+TM         + W+ P +P+         P++L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK+KE+KNGRLA
Sbjct:   40 GRVTM--------SAEWF-PGQPR---------PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLA 198          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  512 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 222          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  512 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 222          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  512 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 71          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  512 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 220          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  512 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLA
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLA 220          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 73/220 (33.18%), Postives = 101/220 (45.91%), Query Frame = 2
Query:   86 QSAFAGQTALRQSNEFVRRVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLA 724
            +++F G   LR S +F+  VG          R+V  A  ++   PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLA
Sbjct:   31 KASFLGGKRLRVS-KFIAPVG---------SRSV--AVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 229          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.515e-18
Identity = 48/79 (60.76%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  491 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLA 724
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLA
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLA 79          
BLAST of DR404097 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 60/176 (34.09%), Postives = 84/176 (47.73%), Query Frame = 2
Query:  218 PDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA-----CQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLAD-DPDQFAELKVKELKNGRLA 724
            PDRP +        P +L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q +      +     L   + +L  WA       ++  G V    I                  FDPLG     P +  EL+ KE+KNGRLA
Sbjct:   63 PDRPLWFP--GSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLA 229          
The following BLAST results are available for this feature:
BLAST of DR404097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB11_SOLLC8.033e-2040.38Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU3.052e-1935.45Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2F_SOLLC5.207e-1966.20Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.207e-1966.20Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC5.207e-1966.20Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC5.207e-1966.20Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC5.207e-1966.20Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB12_PETHY1.160e-1833.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.515e-1860.76Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC2.584e-1834.09Chlorophyll a-b binding protein 7, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404097 ID=DR404097; Name=DR404097; organism=Citrus sinensis; type=EST; length=726bp
GGGGATCTTCAGAGTGCGAAAAGAAGCTTCAGCAACAAAAGGAAAAGCTT
TCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCT
GGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAGGGTTGGAGT
TGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCC
AGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCT
GAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTG
GGATACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTG
AGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGC
GTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGT
TTGGTTCAAGGCTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATC
TTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATCTGGGCC
TGCCAGGTTGTGCTTATGGGTTTTGTTGAAGGATACAGAATTGGTGGCGG
TCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTTTTGACC
CACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGTCAAG
GAGCTCAAGAATGGCCGTCTGGCTAT
back to top