DR404094

Overview
NameDR404094
Unique NameDR404094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7950 contig Csv1_Contig7950:109..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DROAN (Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila ananassae GN=GF12710 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.126e-46
Identity = 89/136 (65.44%), Postives = 106/136 (77.94%), Query Frame = 2
Query:  242 STCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            S C  R AALKRPKT + +C+ECF+  FE EIH  I  + LF+ GE++A+ ASGGKDSTVLA VL  LN RH+YGLDL LLSIDEGI+GYRDDSL+TVK+N   Y +PLKI+SY++LYGWTMD IV  IG  NNCT
Sbjct:    7 SRCGNR-AALKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRRGEKVAVAASGGKDSTVLAHVLKLLNERHDYGLDLVLLSIDEGITGYRDDSLETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DROMO (Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila mojavensis GN=GI19452 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.038e-46
Identity = 86/137 (62.77%), Postives = 106/137 (77.37%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            C      +A+LKRPKT + +C++CF+  FE EIH  I  ++LF+ GE++A+ ASGGKDSTVLA VL  LN RHNYGLDL LLSIDEGI+GYRDDSL+TVK+N   Y +PLKI+SY++LYGWTMD IV  IG  NNCT
Sbjct:    5 CKAKCGNRASLKRPKTGDALCKDCFFAAFEAEIHHTITTSKLFRRGEKVAVAASGGKDSTVLAHVLKLLNERHNYGLDLVLLSIDEGITGYRDDSLETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DROYA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila yakuba GN=GE22576 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.192e-46
Identity = 88/136 (64.71%), Postives = 105/136 (77.21%), Query Frame = 2
Query:  242 STCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            S C  R A LKRPKT + +C+ECF+  FE EIH  I  + LF+ GE++A+ ASGGKDSTVLA VL  LN RHNYGL+L LLSIDEGI+GYRDDSL+TVK+N   Y +PLKI+SY++LYGWTMD IV  IG  NNCT
Sbjct:    7 SQCGNR-AVLKRPKTGDALCKECFFAAFEAEIHHTISSSNLFRLGEKVAVAASGGKDSTVLAHVLKLLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DROWI (Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila willistoni GN=GK22963 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.192e-46
Identity = 89/136 (65.44%), Postives = 105/136 (77.21%), Query Frame = 2
Query:  242 STCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            S C  R A L+RPKT + +C+ECF+  FE EIH  I  NQLF+ G++IA+ ASGGKDSTVLA VL  LN +HNYGLDL LLSIDEGISGYRDDSL+TVK+N   Y + LKI+SY++LYGWTMD IV  IG  NNCT
Sbjct:    7 SQCGNR-AVLRRPKTGDALCKECFFAAFEAEIHHTISSNQLFQPGQKIAVAASGGKDSTVLAHVLKLLNEKHNYGLDLVLLSIDEGISGYRDDSLETVKQNRDDYQMSLKILSYEELYGWTMDRIVAQIGRSNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DROPS (Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=GA20807 PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.568e-45
Identity = 85/137 (62.04%), Postives = 106/137 (77.37%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            C     + AALKRPKT + +C+ECF+  FE EIH  I  ++LF+ GE++A+ ASGGKDSTVLA V+  LN RH+YGL+L LLSIDEGI+GYRDDSL+TVK+N   Y +PLKI+SY++LYGWTMD IV  IG  NNCT
Sbjct:    5 CKAKCGKAAALKRPKTGDALCKECFFAAFEAEIHHTITSSKLFRRGEKVAVAASGGKDSTVLAHVMKLLNERHDYGLELVLLSIDEGITGYRDDSLETVKQNRDDYKMPLKILSYEELYGWTMDRIVSQIGRSNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DROPE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila persimilis GN=GL16852 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.568e-45
Identity = 85/137 (62.04%), Postives = 106/137 (77.37%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            C     + AALKRPKT + +C+ECF+  FE EIH  I  ++LF+ GE++A+ ASGGKDSTVLA V+  LN RH+YGL+L LLSIDEGI+GYRDDSL+TVK+N   Y +PLKI+SY++LYGWTMD IV  IG  NNCT
Sbjct:    5 CKAKCGKAAALKRPKTGDALCKECFFAAFEAEIHHTITSSKLFRRGEKVAVAASGGKDSTVLAHVMKLLNERHDYGLELVLLSIDEGITGYRDDSLETVKQNRDDYKMPLKILSYEELYGWTMDRIVSQIGRSNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_DROVI (Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosophila virilis GN=GJ21203 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.048e-45
Identity = 85/137 (62.04%), Postives = 105/137 (76.64%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            C      +A LKRPKT + +C+ CF+  FE EIH  I+ ++LF+ GE++A+ ASGGKDSTVLA VL  LN RH+YGLDL LLSIDEGI+GYRDDSL+TVK+N   Y +PLKI+SY++LYGWTMD IV  IG  NNCT
Sbjct:    5 CKAKCGNRATLKRPKTGDALCKACFFAAFEAEIHHTIISSKLFRRGEKVAVAASGGKDSTVLAHVLKLLNERHDYGLDLVLLSIDEGITGYRDDSLETVKQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCT 141          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_CAEBR (Cytoplasmic tRNA 2-thiolation protein 1 OS=Caenorhabditis briggsae GN=ctu-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.674e-45
Identity = 84/129 (65.12%), Postives = 103/129 (79.84%), Query Frame = 2
Query:  263 AALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            A +++ K   Q+C  CF + FE+++H+ I+ N LFK GER+AIGASGGKDSTVLAFV+  LN RH+YGLDL LLSIDEGI GYRDDSL  V++N ++YGLPL I+SY DLYGWTMD+IV  IG KNNCT
Sbjct:   20 AKIRKAKNGAQLCGPCFSKSFEDDVHETIINNNLFKRGERVAIGASGGKDSTVLAFVMKTLNDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNRVEYGLPLTILSYNDLYGWTMDDIVAKIGKKNNCT 148          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_CAEEL (Cytoplasmic tRNA 2-thiolation protein 1 OS=Caenorhabditis elegans GN=tut-1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.562e-45
Identity = 84/129 (65.12%), Postives = 104/129 (80.62%), Query Frame = 2
Query:  263 AALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            A +++ K   Q+C  CF   FE+++H+ IV N+LFK GER+AIGASGGKDSTVLA+V+  LN RH+YGLDL LLSIDEGI GYRDDSL  V++N ++YGLPL I+SY+DLYGWTMD+IV  IG KNNCT
Sbjct:   20 AKIRKAKDGAQLCGPCFSRNFEDDVHEAIVNNKLFKRGERVAIGASGGKDSTVLAYVMKTLNDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNRVEYGLPLTILSYRDLYGWTMDDIVAKIGKKNNCT 148          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_ANOGA (Cytoplasmic tRNA 2-thiolation protein 1 OS=Anopheles gambiae GN=AGAP005220 PE=3 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.562e-45
Identity = 84/137 (61.31%), Postives = 107/137 (78.10%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            C +   R A ++RPKT + +C+ECF+  FE EIH  I   QLF+ GE++AI ASGGKDSTVLA V++ LN+R+NYGLDL LLSIDEGI+GYRDDSL+TV +N   YG+PL+++SY++LYGWTMD IV  IG  NNCT
Sbjct:    5 CGSSCGRNAFMRRPKTGDTLCKECFFLAFETEIHNTIQQEQLFRPGEKVAIAASGGKDSTVLAHVMNLLNKRYNYGLDLVLLSIDEGITGYRDDSLKTVAQNRDDYGMPLRVLSYQELYGWTMDRIVAEIGRSNNCT 141          
The following BLAST results are available for this feature:
BLAST of DR404094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CTU1_DROAN4.126e-4665.44Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosoph... [more]
CTU1_DROMO7.038e-4662.77Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosoph... [more]
CTU1_DROYA9.192e-4664.71Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosoph... [more]
CTU1_DROWI9.192e-4665.44Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosoph... [more]
CTU1_DROPS1.568e-4562.04Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosoph... [more]
CTU1_DROPE1.568e-4562.04Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosoph... [more]
CTU1_DROVI2.048e-4562.04Cytoplasmic tRNA 2-thiolation protein 1 OS=Drosoph... [more]
CTU1_CAEBR2.674e-4565.12Cytoplasmic tRNA 2-thiolation protein 1 OS=Caenorh... [more]
CTU1_CAEEL4.562e-4565.12Cytoplasmic tRNA 2-thiolation protein 1 OS=Caenorh... [more]
CTU1_ANOGA4.562e-4561.31Cytoplasmic tRNA 2-thiolation protein 1 OS=Anophel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404094 ID=DR404094; Name=DR404094; organism=Citrus sinensis; type=EST; length=650bp
GGGGCAGAGACTTTGGAGGGGTGAGGGTGCCGGTCAGACCGCTGCTTTCA
TAACAGTTCCATTCCGAGAAGCTGTTGCCGCACTGCAAAAGCAAACTCAA
ATCTTCAATTTTTCCCTCATAACCCAAACTTGATCTCTTGTAAGTCTGTT
AGCTTGTCTCTTCATAGTTTACTTAGTGGGCCATTAACCGTCAATGGAGG
TCGCCGAGTCGAAGTCCAAGAAGGCCGGTGGCCGCCTTTGTTCCACCTGT
AACCAGAGAAAGGCTGCCCTCAAACGACCTAAAACCCTAGAACAGATATG
TAGGGAGTGTTTCTATGAGGTATTTGAGGAGGAGATCCACCAAGTCATTG
TGGGCAATCAGCTATTCAAGGCTGGTGAGCGTATTGCCATCGGCGCCTCT
GGTGGAAAAGATTCCACTGTCCTTGCTTTTGTGTTGTCAGAGCTGAACCG
GCGTCACAACTATGGCCTTGATCTTTTCCTCCTATCAATTGATGAAGGCA
TTTCAGGATACAGGGATGATTCACTTCAAACTGTCAAAAGAAATGAAATT
CAGTATGGTCTGCCACTGAAGATTGTTTCATACAAGGATTTATATGGATG
GACAATGGATGAGATAGTGAAGGTGATCGGTTTAAAGAATAATTGCACCT
back to top