DR404094

Overview
NameDR404094
Unique NameDR404094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_LODEL (Cytoplasmic tRNA 2-thiolation protein 1 OS=Lodderomyces elongisporus GN=NCS6 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.327e-44
Identity = 89/159 (55.97%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  200 VAESKSKKAG-GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGER--------IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCT 649
            V  S +KK     LC  C+ RKA +KRPK L ++C+ECF+ VFE E+H  IV N+LF   E         +AIGASGGKDSTVLA V+  LN R+NYGL L LL IDEGI GYRD SL+TVK N+ +Y +PL+I+SYKDLY WTMDE+V   G++++CT
Sbjct:    2 VESSNTKKVKVSSLCELCHGRKAVMKRPKNLRKLCKECFFHVFETEVHNTIVENKLFANVENSEFPERRAVAIGASGGKDSTVLASVMKTLNERYNYGLKLVLLCIDEGIKGYRDHSLETVKMNQKEYDMPLEILSYKDLYDWTMDEVVSCAGIRSSCT 160          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_BOVIN (Cytoplasmic tRNA 2-thiolation protein 1 OS=Bos taurus GN=CTU1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.618e-28
Identity = 60/129 (46.51%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVK 622
            C++C++ +AAL+RP++ + +C  CF   FE E+   +V  +L   G  +A+GASGGKDSTVLA VL EL  R   G+ L L+++DEGI GYRD +L  V+R   ++ LPL +V+Y DL+ GWTMD + +
Sbjct:    6 CASCHKARAALRRPRSGQALCGSCFCAAFEAEVLHTVVAGRLLPPGAVVAVGASGGKDSTVLAHVLRELAPR--LGISLHLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYADLFGGWTMDAVAR 132          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_RAT (Cytoplasmic tRNA 2-thiolation protein 1 OS=Rattus norvegicus GN=Ctu1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.602e-27
Identity = 59/129 (45.74%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVK 622
            C +C++ +AAL+RP++ + +C  CF   FE E+ + ++   L   G  +A+GASGGKDSTVLA VL EL  R   G+ L L+++DEGI GYRD +L+ V+    ++ LPL IV+Y+DL+ GWTMD + +
Sbjct:    6 CFSCHKARAALRRPRSGQALCGPCFCAAFEAEVLRTVLAGHLLPQGAVVAVGASGGKDSTVLAHVLRELAPR--LGITLHLVAVDEGIGGYRDAALEAVRSQAARWELPLTIVAYEDLFGGWTMDAVAR 132          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_MOUSE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Mus musculus GN=Ctu1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.602e-27
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVK 622
            C +C++ +AAL+RP++ + +C  CF   FE E+   ++   L   G  +A+GASGGKDSTVLA VL EL  R   G+ L L+++DEGI GYRD +L+ V+    ++ LPL IV+Y+DL+ GWTMD + +
Sbjct:    6 CFSCHKTRAALRRPRSGQALCGSCFCAAFEAEVLHTVLAGHLLPPGAVVAVGASGGKDSTVLAHVLRELAPR--LGITLHLVAVDEGIGGYRDAALEAVRSQAARWELPLTIVAYEDLFGGWTMDAVAR 132          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: CTU1_HUMAN (Cytoplasmic tRNA 2-thiolation protein 1 OS=Homo sapiens GN=CTU1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.743e-26
Identity = 58/129 (44.96%), Postives = 86/129 (66.67%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVK 622
            C++C+  +AAL+RP + + +C  CF   FE E+   ++  +L   G  +A+GASGGKDSTVLA VL  L  R   G+ L L+++DEGI GYRD +L  V+R   ++ LPL +V+Y+DL+ GWTMD + +
Sbjct:    6 CASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDSTVLAHVLRALAPR--LGISLQLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYEDLFGGWTMDAVAR 132          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: Y1157_METJA (CTU1/ATPBD3 family protein MJ1157 OS=Methanocaldococcus jannaschii GN=MJ1157 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  236 LCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK 622
            LCS  N+  A   +  +   +C+ECF +  E    +V+ G  + +   +I IG SGGKDS V+A++L EL + H     L    +DEGI G+R+ + + VK    +Y L LKI+ ++D  G+T+DEIVK
Sbjct:   39 LCSCGNE--AFYYQKYSNRHLCKECFKKDIERRAKKVL-GKDIIRNNVKIGIGISGGKDSLVMAYILKELFK-HIPNAKLICFFVDEGIKGFRNIAEKYVKEFCKEYNLDLKIIKFEDEIGYTLDEIVK 163          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: Y1478_METJA (CTU1/ATPBD3 family protein MJ1478 OS=Methanocaldococcus jannaschii GN=MJ1478 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.750e-12
Identity = 43/127 (33.86%), Postives = 73/127 (57.48%), Query Frame = 2
Query:  239 CSTCNQRK-AALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEI 616
            C  C+++    LK PK    +C+E F E FE ++ + I   ++    E+I +  SGGKD    A+VL +L     Y ++LF +++  GI G+ ++SL+ VK    +  +PL +V+ KD+ G TM++I
Sbjct:    7 CKFCDKKSYIKLKSPKMY--LCKEHFVEYFENKVKKSIDKYKMLSKDEKILVAVSGGKDGHAAAWVLKKL----GYNIELFHINL--GIEGFSEESLKAVKELAEKLEVPLHVVNLKDITGKTMEDI 125          
BLAST of DR404094 vs. ExPASy Swiss-Prot
Match: ABP3L_HUMAN (Putative ATP-binding domain-containing protein 3-like protein OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.351e-11
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  239 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGI 502
            C++C+   A+L+RP + + +C  CF   FE E+  +++   L   G  +A+G SGGKDSTVLA VL  L      G+ L L+++D+GI
Sbjct:    6 CASCHVACASLRRPCSGQVLCGSCFCTAFEAEVQHMVLVGYLLPPGAVVALGTSGGKDSTVLAHVLRTL--APGLGILLQLMAVDKGI 91          
The following BLAST results are available for this feature:
BLAST of DR404094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CTU1_LODEL1.327e-4455.97Cytoplasmic tRNA 2-thiolation protein 1 OS=Loddero... [more]
CTU1_BOVIN6.618e-2846.51Cytoplasmic tRNA 2-thiolation protein 1 OS=Bos tau... [more]
CTU1_RAT5.602e-2745.74Cytoplasmic tRNA 2-thiolation protein 1 OS=Rattus ... [more]
CTU1_MOUSE5.602e-2745.74Cytoplasmic tRNA 2-thiolation protein 1 OS=Mus mus... [more]
CTU1_HUMAN4.743e-2644.96Cytoplasmic tRNA 2-thiolation protein 1 OS=Homo sa... [more]
Y1157_METJA1.691e-1537.98CTU1/ATPBD3 family protein MJ1157 OS=Methanocaldoc... [more]
Y1478_METJA1.750e-1233.86CTU1/ATPBD3 family protein MJ1478 OS=Methanocaldoc... [more]
ABP3L_HUMAN7.351e-1139.77Putative ATP-binding domain-containing protein 3-l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAG-PNP1245E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404094 ID=DR404094; Name=DR404094; organism=Citrus sinensis; type=EST; length=650bp
GGGGCAGAGACTTTGGAGGGGTGAGGGTGCCGGTCAGACCGCTGCTTTCA
TAACAGTTCCATTCCGAGAAGCTGTTGCCGCACTGCAAAAGCAAACTCAA
ATCTTCAATTTTTCCCTCATAACCCAAACTTGATCTCTTGTAAGTCTGTT
AGCTTGTCTCTTCATAGTTTACTTAGTGGGCCATTAACCGTCAATGGAGG
TCGCCGAGTCGAAGTCCAAGAAGGCCGGTGGCCGCCTTTGTTCCACCTGT
AACCAGAGAAAGGCTGCCCTCAAACGACCTAAAACCCTAGAACAGATATG
TAGGGAGTGTTTCTATGAGGTATTTGAGGAGGAGATCCACCAAGTCATTG
TGGGCAATCAGCTATTCAAGGCTGGTGAGCGTATTGCCATCGGCGCCTCT
GGTGGAAAAGATTCCACTGTCCTTGCTTTTGTGTTGTCAGAGCTGAACCG
GCGTCACAACTATGGCCTTGATCTTTTCCTCCTATCAATTGATGAAGGCA
TTTCAGGATACAGGGATGATTCACTTCAAACTGTCAAAAGAAATGAAATT
CAGTATGGTCTGCCACTGAAGATTGTTTCATACAAGGATTTATATGGATG
GACAATGGATGAGATAGTGAAGGTGATCGGTTTAAAGAATAATTGCACCT
back to top