CX069878

Overview
NameCX069878
Unique NameCX069878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069878_ssr679 microsatellite CX069878_ssr679:679..690. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13754 contig Csv1_Contig13754:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METPE (30S ribosomal protein S10P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            + K RI L+  +   +E VC  +   A+   + + GP+ +PTK L +  RKSP GEGT TWDR+++RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLTGTDFNKVEMVCDKIREIAERTGVNLAGPIPLPTKRLVVPIRKSPDGEGTATWDRWQMRVHKRLIDIDADERALRQLMRIQVPKDIGIEIVL 100          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METM7 (30S ribosomal protein S10P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHTELDGVCDQIKAIAEKTGVDMAGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_PYRIL (30S ribosomal protein S10P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 36/98 (36.73%), Postives = 68/98 (69.39%), Query Frame = -1
Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K+RI L   N  ++E+V  ++V  AK   ++VKGP+ +PT+ L +T R++P G+G +T+D +ELR+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVEQVAREIVDLAKKMGVQVKGPIPLPTRRLVVTVRRAPSGQGYHTFDHWELRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METM6 (30S ribosomal protein S10P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHVELDGVCDQIKAIAEKTGVDMAGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METHJ (30S ribosomal protein S10P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            + K RI L+  + + +E+VC  +   A+   + + GP+ +PT+ L +  RKSP GEGT TWDR+++RVHKR+IDL +    ++Q+    +   + +E+ +
Sbjct:    1 MQKARIRLTGTDYQKVEEVCEKIKEIAERTGVNLAGPIPLPTRKLVVPIRKSPDGEGTATWDRWQMRVHKRLIDLDADERALRQLMRTQVPKDIGIEIVL 100          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_PYRCJ (30S ribosomal protein S10P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 36/98 (36.73%), Postives = 67/98 (68.37%), Query Frame = -1
Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K+RI L   N  +L++V  ++V  AK   + V+GP+ +PTK L +T R++P G+G +T+D +ELR+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADLDQVAREIVDLAKKMGVAVRGPIPLPTKRLMVTVRRAPSGQGYHTFDHWELRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METST (30S ribosomal protein S10P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            ++K RI L+  + + +  VC  L + A+   + + GP+ +PTK L + TRKSP GEG  TW+++ELR+HKR++ + +    ++Q+  + +   V +E+ +
Sbjct:    1 MNKARIKLTGTDPEKIADVCNQLKKIAERTGVDLSGPIPLPTKKLVVPTRKSPDGEGKATWEKWELRIHKRLVGIEADERAMRQVMKVNVPDNVSIEIEL 100          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METS3 (30S ribosomal protein S10P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps10p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.502e-13
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            +H+ RI L+  + + L  VC  L + A+   + + GP+ +PTK L + TRKSP GEG  +W+++ELR+HKR++ + +    ++Q+  + +   V +E+ +
Sbjct:    1 MHQARIKLTGTDPEKLAYVCDQLKKIAERTGVDLSGPIPLPTKKLVVPTRKSPDGEGKASWEKWELRIHKRLVGIGADERAMRQVMKVNVPDNVSIEIEL 100          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_HYPBU (30S ribosomal protein S10P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps10p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 36/100 (36.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            + K  I L S NV++L +V   +   AK   +R++GP+ +PT+ L + T K P GEG+  WD++ELR+HKR++ L +   V++QI  + +   V +E+ +
Sbjct:    2 VQKAEIKLWSTNVESLNQVVEQIKAIAKKTGVRMRGPIPLPTRRLIVPTLKLPHGEGSKKWDKWELRIHKRLVILDADERVIRQIMRVRVPEDVYIEIRL 101          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_PYRAE (30S ribosomal protein S10P OS=Pyrobaculum aerophilum GN=rps10p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 34/98 (34.69%), Postives = 68/98 (69.39%), Query Frame = -1
Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K+RI L   N  ++E+V  ++V  AK   ++V+GP+ +PT+ L +T R++P G+G +T+D +E+R+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVEQVAREIVDLAKKMGVQVRGPIPLPTRRLIVTVRRAPSGQGYHTFDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105          
The following BLAST results are available for this feature:
BLAST of CX069878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_METPE5.162e-1436.0030S ribosomal protein S10P OS=Methanosphaerula pal... [more]
RS10_METM75.162e-1439.0030S ribosomal protein S10P OS=Methanococcus maripa... [more]
RS10_PYRIL6.742e-1436.7330S ribosomal protein S10P OS=Pyrobaculum islandic... [more]
RS10_METM66.742e-1439.0030S ribosomal protein S10P OS=Methanococcus maripa... [more]
RS10_METHJ6.742e-1435.0030S ribosomal protein S10P OS=Methanospirillum hun... [more]
RS10_PYRCJ8.805e-1436.7330S ribosomal protein S10P OS=Pyrobaculum calidifo... [more]
RS10_METST1.150e-1333.0030S ribosomal protein S10P OS=Methanosphaera stadt... [more]
RS10_METS31.502e-1333.0030S ribosomal protein S10P OS=Methanobrevibacter s... [more]
RS10_HYPBU1.962e-1336.0030S ribosomal protein S10P OS=Hyperthermus butylic... [more]
RS10_PYRAE2.562e-1334.6930S ribosomal protein S10P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D08-G15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069878 ID=CX069878; Name=CX069878; organism=Citrus sinensis; type=EST; length=734bp
CCCCCCCTCTTTTTTATCCAAACATTAGCTTAATATAAAATGAACAGTAA
ACAAAATCCCTCTCCACATAACCCAAAACATAATTTTTAACTTGCAAAAT
AGTATGGCAAAAAACAAACTAACATCAACCCTACATCGATTGTTCAGTCT
TAAATTCTTGACAAATTCTTCCAAGCAAACAGTGTCATGAGGGAAGATTA
CTTCTGATTTCACTAAAAGCTAAATGGACACAAAAATAAAGTGCCAGACA
TTTAAGAGTCGGCAATGGTAACCTCCACTTCCACGCCAGGTTCAATGGTA
ATGGAAGTGATCTGCTTCACGACATCAGGGGAGCTAAAGAGATCAATAAC
TCTCTTGTGAACACGGAGCTCAAATCTGTCCCAAGTGTTGGTTCCTTCAC
CACAAGGGGACTTCCTAGTGGTGATGTGAAGAACCTTGGTAGGCATCCTC
ACTGGACCCTTGACCCTCAATCTCTTGTCCTTGGCACCACGAACTAAATC
CGTACAGACTTTCTCAAGATTTTTAACATTCTTGGAGGAAAGTGTGATTC
TGATCTTATGAATCTGCTCCTGGGCCTCCTCCAAACCCGGTTTGGTGGGC
TTCATTGCTGCATACGCCATTGTTTCTTGCTTCTACTAGATTTTCCTTAT
AGGATTTCGAGAGACCGGAAGAGTGAGAGCTGCTGCTGCTGTTGCTGCTT
CTGCTGCCTCTTCTATGAAACAATGGCTTGTCCT
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