CX069878 | Citrus Genome Database

Overview


Name	CX069878
Unique Name	CX069878
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	734

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX069878_ssr679	microsatellite	CX069878_ssr679:679..690.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13754	contig	Csv1_Contig13754:1..730.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_THENV (30S ribosomal protein S10P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps10p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 33/98 (33.67%), Postives = 68/98 (69.39%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K+RI L   N  ++++V  ++V  AK   ++V+GP+ +PT+ L +T R++P G+G +T+D +E+R+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPTDVDQVAREIVDLAKKMGVQVRGPIPLPTRRLMVTVRRAPSGQGYHTFDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_PYRAR (30S ribosomal protein S10P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps10p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 33/98 (33.67%), Postives = 68/98 (69.39%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K+RI L   N  ++++V  ++V  AK   ++V+GP+ +PT+ L +T R++P G+G +T+D +E+R+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVDQVAREIVDLAKKMGVQVRGPIPLPTRRLVVTVRRAPSGQGYHTYDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METB6 (30S ribosomal protein S10P OS=Methanoregula boonei (strain 6A8) GN=rps10p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.735e-13
Identity = 35/100 (35.00%), Postives = 61/100 (61.00%), Query Frame = -1

Query:  264 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 563
            + K RI L+  +   +E VC  +   A+   + + GP+ +PTK L +  RKSP GEGT T+DR+++RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLTGTDFNKVETVCDRIREIAERTGVNLAGPIPLPTKRLVVPIRKSPDGEGTATFDRWQMRVHKRLIDIDADERALRQLMRIQVPKDIGIEIVL 100

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULSO (30S ribosomal protein S10P OS=Sulfolobus solfataricus GN=rps10p PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULIY (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULIN (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULIM (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULIL (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULIK (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101

[Close]

BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULIA (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain M.16.27) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = -1

Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101

The following BLAST results are available for this feature:

BLAST of CX069878 vs. ExPASy Swiss-Prot

BLAST of CX069878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74


Match Name	E-value	Identity	Description
RS10_THENV	4.370e-13	33.67	30S ribosomal protein S10P OS=Thermoproteus neutro...	[more]
RS10_PYRAR	4.370e-13	33.67	30S ribosomal protein S10P OS=Pyrobaculum arsenati...	[more]
RS10_METB6	9.735e-13	35.00	30S ribosomal protein S10P OS=Methanoregula boonei...	[more]
RS10_SULSO	2.169e-12	36.36	30S ribosomal protein S10P OS=Sulfolobus solfatari...	[more]
RS10_SULIY	2.169e-12	36.36	30S ribosomal protein S10P OS=Sulfolobus islandicu...	[more]
RS10_SULIN	2.169e-12	36.36	30S ribosomal protein S10P OS=Sulfolobus islandicu...	[more]
RS10_SULIM	2.169e-12	36.36	30S ribosomal protein S10P OS=Sulfolobus islandicu...	[more]
RS10_SULIL	2.169e-12	36.36	30S ribosomal protein S10P OS=Sulfolobus islandicu...	[more]
RS10_SULIK	2.169e-12	36.36	30S ribosomal protein S10P OS=Sulfolobus islandicu...	[more]
RS10_SULIA	2.169e-12	36.36	30S ribosomal protein S10P OS=Sulfolobus islandicu...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_13D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D08-G15-1-5.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069878 ID=CX069878; Name=CX069878; organism=Citrus sinensis; type=EST; length=734bp
CCCCCCCTCTTTTTTATCCAAACATTAGCTTAATATAAAATGAACAGTAA
ACAAAATCCCTCTCCACATAACCCAAAACATAATTTTTAACTTGCAAAAT
AGTATGGCAAAAAACAAACTAACATCAACCCTACATCGATTGTTCAGTCT
TAAATTCTTGACAAATTCTTCCAAGCAAACAGTGTCATGAGGGAAGATTA
CTTCTGATTTCACTAAAAGCTAAATGGACACAAAAATAAAGTGCCAGACA
TTTAAGAGTCGGCAATGGTAACCTCCACTTCCACGCCAGGTTCAATGGTA
ATGGAAGTGATCTGCTTCACGACATCAGGGGAGCTAAAGAGATCAATAAC
TCTCTTGTGAACACGGAGCTCAAATCTGTCCCAAGTGTTGGTTCCTTCAC
CACAAGGGGACTTCCTAGTGGTGATGTGAAGAACCTTGGTAGGCATCCTC
ACTGGACCCTTGACCCTCAATCTCTTGTCCTTGGCACCACGAACTAAATC
CGTACAGACTTTCTCAAGATTTTTAACATTCTTGGAGGAAAGTGTGATTC
TGATCTTATGAATCTGCTCCTGGGCCTCCTCCAAACCCGGTTTGGTGGGC
TTCATTGCTGCATACGCCATTGTTTCTTGCTTCTACTAGATTTTCCTTAT
AGGATTTCGAGAGACCGGAAGAGTGAGAGCTGCTGCTGCTGTTGCTGCTT
CTGCTGCCTCTTCTATGAAACAATGGCTTGTCCT