CX069878

Overview
NameCX069878
Unique NameCX069878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069878_ssr679 microsatellite CX069878_ssr679:679..690. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13754 contig Csv1_Contig13754:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_AERPE (30S ribosomal protein S10P OS=Aeropyrum pernix GN=rps10p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  270 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 557
            K+RI L S NV++LE V   +   A    +R++GPV +P K L +   + P GEG+  W+ +E++VHKR+IDL +   V++ +  I +   V +E+
Sbjct:    4 KLRIWLWSTNVRSLENVVEQIRNIANKTGIRMRGPVPLPVKRLEVPVFRLPHGEGSKYWEHWEMKVHKRLIDLEADERVLRHLMRIKVPEDVYIEI 99          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULTO (30S ribosomal protein S10P OS=Sulfolobus tokodaii GN=rps10p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 30/98 (30.61%), Postives = 56/98 (57.14%), Query Frame = -1
Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S N++NL  V   +   A+   + + GP+ +PT  + +   + P GEG   W+ +E+++HKR+ID+ S   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNIENLNFVVNQIKTLAQKTGVEISGPIPLPTSRMEVPVMRLPHGEGKKKWEHWEMKIHKRIIDIASDERVMRQLMRVRVPDDVYIEIEL 101          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_SULAC (30S ribosomal protein S10P OS=Sulfolobus acidocaldarius GN=rps10p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 30/98 (30.61%), Postives = 56/98 (57.14%), Query Frame = -1
Query:  264 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 557
            K RI L S N+ +L  V   +   A+   ++V GP+ +PT  + +   + P GEG   W+ +E++VHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSSNIDSLNFVVNQIRNMAQKTGIQVSGPIPLPTTRMEVPVMRLPHGEGKKKWEHWEMKVHKRIIDIAADERVMRQLMRVRVPDDVYIEIEL 101          
BLAST of CX069878 vs. ExPASy Swiss-Prot
Match: RS10_METS5 (30S ribosomal protein S10P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps10p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 32/100 (32.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  264 HKIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 560
            +K RI L S NV NL  V    ++G  DK  + ++GP+ +PT+ + +   + P GEG   W+++E+ +HKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    3 NKARIRLWSTNVNNLNYVVNQ-IKGIVDKTGVSMRGPIPLPTRRMEVPVMRLPHGEGRKKWEKWEMSLHKRIIDISADERVMRQLMRVKVPEDVYIEIQL 101          
The following BLAST results are available for this feature:
BLAST of CX069878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_AERPE4.832e-1236.4630S ribosomal protein S10P OS=Aeropyrum pernix GN=... [more]
RS10_SULTO1.836e-1130.6130S ribosomal protein S10P OS=Sulfolobus tokodaii ... [more]
RS10_SULAC6.977e-1130.6130S ribosomal protein S10P OS=Sulfolobus acidocald... [more]
RS10_METS56.977e-1132.0030S ribosomal protein S10P OS=Metallosphaera sedul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D08-G15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069878 ID=CX069878; Name=CX069878; organism=Citrus sinensis; type=EST; length=734bp
CCCCCCCTCTTTTTTATCCAAACATTAGCTTAATATAAAATGAACAGTAA
ACAAAATCCCTCTCCACATAACCCAAAACATAATTTTTAACTTGCAAAAT
AGTATGGCAAAAAACAAACTAACATCAACCCTACATCGATTGTTCAGTCT
TAAATTCTTGACAAATTCTTCCAAGCAAACAGTGTCATGAGGGAAGATTA
CTTCTGATTTCACTAAAAGCTAAATGGACACAAAAATAAAGTGCCAGACA
TTTAAGAGTCGGCAATGGTAACCTCCACTTCCACGCCAGGTTCAATGGTA
ATGGAAGTGATCTGCTTCACGACATCAGGGGAGCTAAAGAGATCAATAAC
TCTCTTGTGAACACGGAGCTCAAATCTGTCCCAAGTGTTGGTTCCTTCAC
CACAAGGGGACTTCCTAGTGGTGATGTGAAGAACCTTGGTAGGCATCCTC
ACTGGACCCTTGACCCTCAATCTCTTGTCCTTGGCACCACGAACTAAATC
CGTACAGACTTTCTCAAGATTTTTAACATTCTTGGAGGAAAGTGTGATTC
TGATCTTATGAATCTGCTCCTGGGCCTCCTCCAAACCCGGTTTGGTGGGC
TTCATTGCTGCATACGCCATTGTTTCTTGCTTCTACTAGATTTTCCTTAT
AGGATTTCGAGAGACCGGAAGAGTGAGAGCTGCTGCTGCTGTTGCTGCTT
CTGCTGCCTCTTCTATGAAACAATGGCTTGTCCT
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