CX069873

Overview
NameCX069873
Unique NameCX069873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9464 contig Csv1_Contig9464:23..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.310e-18
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  214 IPTID---LDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKK----SWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIE---YMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            IP ID   LD   +   +  IA    EWG FQ+ NHGIP +L+ +++ V  E ++L +EE+   S+P    D       L KE +G++     W D     V+     N   WP+NPP +    +EY + +R++ +K+               K+A  GD      +  K+++YPPCPR DL  G+ AHTD   + +L
Sbjct:    3 IPVIDFSKLDGKERAETMARIANGCEEWGFFQLVNHGIPVELLERVKKVSSECYKL-REERFEGSKPVQLLDT------LVKEGDGQRLDNVDWED-----VFVLQDDNE--WPSNPPDFEETMKEYREEIRKLAEKMMEVMDENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILL 186          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 64/220 (29.09%), Postives = 99/220 (45.00%), Query Frame = 1
Query:  142 IPAEFVRPEKEQPASATYHGPAPEIPTIDLD-DPVQDR-LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQE-EKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYR----AVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYML-KINYYPPCPRPDLALGVVAHTDLSALTVL 777
            +P  FV P K++      H   P I    +D DP++ + +V  + +AS +WG FQV NHGIP+ ++ +     ++FFE   E +K+ Y+R    K V      L K      SW D +F  + P           NPPS +       E    + ++V    FT                    D  ++    NYYPPCP+P+L +G + HTD+  +T+L
Sbjct:   37 VPQIFVLPPKDRAKKCETHFVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAP-----------NPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTIL 245          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.470e-17
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   88 MEVERVQAIASLSHSNGTIPAEFVRPEKEQPASATYHGPAPEIPTIDLDDPVQDRL----VRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREV 594
            + VE VQ +A     N  +P  +VRPE E            EIP IDL   +  +     +     A  +WG FQ+ NHG+  ++I K++   ++FF LP +EK  Y +  +   ++GYG       E K  W D  F    P    N RFWP +P S+R   E+Y+  +++V
Sbjct:   12 LPVENVQVLAGKELKN--LPNRYVRPELEHDDVVPIDNSL-EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNG--MEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKV 179          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.226e-16
Identity = 63/216 (29.17%), Postives = 105/216 (48.61%), Query Frame = 1
Query:  139 TIPAEFVRP-EKEQPASATYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEK-EVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREV-VDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            +IP  F+ P ++  PA+         +P ID+    +D + ++I ++ +E+G  QV NHGI   ++ ++ AV  EFF++P E+K E +S     ++    G+    E  G+K W+D +   ++P  S + + WP+ P   R V   Y    R V ++ L                + +GG     ++ INYYPP P P   LG+  H D   +TVL
Sbjct:   14 SIPDSFLLPADRLHPATTDV-----SLPIIDMSRG-RDEVRQAILDSGKEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDKAEFFSEDRSERNKLFCGSAF--ETLGEKYWID-VLELLYPLPSGDTKDWPHKPQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPDFFVGDISGG---RVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVL 217          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.601e-16
Identity = 64/215 (29.77%), Postives = 99/215 (46.05%), Query Frame = 1
Query:  139 TIPAEFV-RPEKEQPASATYHGPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEK-EVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            ++P  FV   +K  PA+         +P IDL    +D + RSI EA +E G FQV NHG+   ++  ++ + ++FF LP  +K  +YS      +    G     +  G+K W D L      P   +   WP+ P   R V E++    R+V  +L               +    G ++  +L IN+YP CP PD ALG   H D + +T+L
Sbjct:   13 SLPESFVFASDKVPPATKA----VVSLPIIDLSCG-RDEVRRSILEAGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSGATY--DTGGEKYWRDCLRLACPFPVDDSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNV--ILNINHYPSCPNPDKALGQPPHCDRNLITLL 218          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 65/232 (28.02%), Postives = 100/232 (43.10%), Query Frame = 1
Query:  115 ASLSHSNGTIPAEFVRPEKEQP---ASATYHGPAPEIPTIDLDDP-VQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKE-VYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWP--PSSINYRFWPNNPPSYRAVNEEYAKYMREV----VDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            A++      IP++F+ PE E P   A+   H P  +I  +   DP     + R + EA    G FQV NHGI ++L+         FF +P  EK+    RP ++    GY +        K  W + L  R  P  P+ +           +R + E YA+Y  E+    ++ +               +   G D I   +++NYYPPC RP   LG   H D ++LT+L
Sbjct:    8 AAVLSGRADIPSQFIWPEGESPTPDAAEELHVPLIDIGGMLSGDPRATAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESC---GYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSI---MRLNYYPPCQRPMETLGTGPHCDPTSLTIL 233          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.943e-15
Identity = 72/224 (32.14%), Postives = 103/224 (45.98%), Query Frame = 1
Query:  142 IPAEFVRPEKEQPASATYHGPAPE----IPTIDL-----DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQE-EKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHL--FHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            IP+ F  P    PA+ T   P       IPTIDL     D   +  LV  I +A+ +WG FQV NHGIP D++ K+    +EF E   E +K  YSR   +K V  Y +          +W D L  +    PP         + P +   +  EY+K + ++   LF              K+    + +  +L  +YYPPCP+PDL LG+  H+D S LT+L
Sbjct:   38 IPSIFRAP----PATLTSPKPPSSSDFSIPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMV--YSSNFDLFSSPAANWRDTLGCYTAPDPPRP------EDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSL--LLLGHYYPPCPQPDLTLGLTKHSDNSFLTIL 247          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.150e-15
Identity = 57/199 (28.64%), Postives = 86/199 (43.22%), Query Frame = 1
Query:  199 GPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEK-EVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYR---AVNEEYAKYMREVVDKL----FTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALT 771
            G    +P +D+ DP       ++A A+++WG F +  HG+P +L+ +++A     F LP  EK     RP D+    GYG+        K  W +          S   + WP     YR   AV EE+ + MR + DKL                    E    + +   + +N+YP CP P  ALG++AHTD    T
Sbjct:   44 GGPDAVPVVDMRDPCA---AEAVALAAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDS---CGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFT 236          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.726e-15
Identity = 57/199 (28.64%), Postives = 85/199 (42.71%), Query Frame = 1
Query:  199 GPAPEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEK-EVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYR---AVNEEYAKYMREVVDKL----FTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALT 771
            G    +P +D+ DP       ++  A+++WG F +  HG+P DL+ +++A     F LP  EK     RP D+    GYG+        K  W +          S   + WP     YR   AV EE+ + MR + DKL                    E    + +   + +N+YP CP P  ALG++AHTD    T
Sbjct:   44 GEPDAVPVVDMRDPFA---AEAVGLAAQDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDS---CGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRKLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFT 236          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.785e-15
Identity = 63/237 (26.58%), Postives = 102/237 (43.04%), Query Frame = 1
Query:  118 SLSHSNGTIPAEFVRPEKEQPASATYHGPAPEIPTIDLDDPVQDR-----LVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSS------------INYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            S+ +    IP +F+ P+ E+P+         ++P IDL + + D        R I+EA ++ G F V NHGI  +LI         FF++P  EK+   R +   +  GY +        K  W + L  R     S            + + F P     +  V +EY + M  +  K+               +E    +D   ++++NYYPPC +PDL LG   H D ++LT+L
Sbjct:   32 SMLNLQANIPNQFIWPDDEKPSINVLE---LDVPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSG--ESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQP-----FGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDS--IMRLNYYPPCIKPDLTLGTGPHCDPTSLTIL 256          
The following BLAST results are available for this feature:
BLAST of CX069873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ACCO_MUSAC1.310e-1831.821-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
ACCH3_SOLLC2.234e-1829.091-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
NCS1_COPJA2.470e-1731.79S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
IDS2_HORVU1.226e-1629.17Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
IDS3_HORVU1.601e-1629.772'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
GAO1B_WHEAT3.019e-1528.02Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
ACCH1_ARATH3.943e-1532.141-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3O22_WHEAT5.150e-1528.64Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O23_WHEAT6.726e-1528.64Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
GAOX1_ARATH8.785e-1526.58Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13D05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D05-G9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069873 ID=CX069873; Name=CX069873; organism=Citrus sinensis; type=EST; length=779bp
CACAGTCGCAGGAAAGGCGCAAGCCAAGAAAGAGAGAGGGAGAGAAGGAA
AAGAAAAGTGGTGGGGTTTTGCTGGAAAATAAAATTAATGGAGGTGGAGA
GGGTCCAAGCCATTGCTTCCTTATCCCATTCAAATGGCACAATTCCAGCA
GAGTTCGTAAGACCCGAAAAAGAACAGCCAGCAAGCGCAACGTACCACGG
CCCCGCTCCTGAAATCCCCACGATCGATCTCGACGACCCCGTTCAAGACA
GACTCGTACGTTCCATCGCGGAAGCCAGCCGGGAGTGGGGGATTTTCCAG
GTTACAAACCACGGGATACCTAGTGACCTCATCGGTAAACTGCAAGCCGT
CGGCAAAGAATTTTTTGAGCTCCCTCAGGAAGAGAAAGAAGTGTATTCTC
GTCCGGCTGATGCAAAAGACGTGCAAGGATACGGCACAAAGTTACAGAAA
GAAGTCGAAGGAAAGAAATCTTGGGTTGATCATCTCTTCCACAGGGTTTG
GCCTCCGTCTTCTATCAACTACCGCTTTTGGCCCAACAACCCTCCTTCTT
ACCGAGCGGTGAATGAGGAGTATGCAAAGTACATGAGGGAGGTGGTGGAT
AAGTTGTTTACGTATCTTTCGTTGGGACTGGGTGTCGAAGGAGGTGTTTT
GAAAGAAGCAGCGGGAGGAGACGACATTGAGTACATGCTCAAGATTAATT
ACTATCCGCCATGCCCACGTCCTGATCTTGCTCTTGGAGTGGTGGCCCAC
ACTGATCTTTCCGCCCTCACCGTTCTTGT
back to top