CX069873

Overview
NameCX069873
Unique NameCX069873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9464 contig Csv1_Contig9464:23..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 55/214 (25.70%), Postives = 94/214 (43.93%), Query Frame = 1
Query:  160 RPEKEQPASATYHGP---APEIPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVV-DKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCP----RPDLALGVVAHTDLSALTVL 777
            +P  EQ      + P   +  IP +DL  P    L   I +A  ++G F+V NHGIP D I +L++   +FF LPQ EKE     A   +  GYG K +  + G   W+++L   +      N+  +  +   +R + ++Y   MR +  + L                +       + + ++N+YP CP      +  +G   HTD   +++L
Sbjct:    6 KPTSEQYTYVRNNMPITFSSSIPLVDLSKPDAKTL---IVKACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKE----KAGPANPFGYGNK-RIGLNGDIGWIEYLL--LTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISIL 209          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 45/175 (25.71%), Postives = 82/175 (46.86%), Query Frame = 1
Query:  256 VRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            +  I +A   WG F++ NHGI  +L+  ++ + KE +    E++  +      K ++     +Q E+     W    F R  P S+I+    P+    +R   +E+A+ + ++ ++L               K+A  G     +  K++ YPPCPRP+L  G+ AHTD   + +L
Sbjct:   21 MEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQR--FKEMVATKGLEA----VQSEINDL-DWESTFFLRHLPVSNISEI--PDLEQDHRKAMKEFAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILL 186          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 43/175 (24.57%), Postives = 79/175 (45.14%), Query Frame = 1
Query:  256 VRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            +  I +A   WG F++ NHGIP +++  ++ + K  ++   E++  +      K ++G   ++         W    F R  P S+I+    P+    YR V  ++ K + ++ ++L               K    G     +  K++ YPPCP+PDL  G+ AHTD   + +L
Sbjct:   21 MEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQR--FKELVAKKGLEGVEVEVTD-----MDWESTFFLRHLPSSNISQL--PDLDDVYREVMRDFRKRLEKLAEELLDLLCENLGLEKSYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILL 186          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 65/226 (28.76%), Postives = 91/226 (40.27%), Query Frame = 1
Query:  142 IPAEFVRPEKE-QPASATYHGPAPEIPTIDL------DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHL---FH-RVWPPSSINYRFWPNNPPSYRAVNEEYAKY---MREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            IP  FV P  + +PASA       ++P +D+      D     R    +A A    G FQV+ HG+ + L         +FF LP  EK    R      V GY +        K  W + L   FH R   P   +Y F     P +  +   Y KY   M+E+   +               +E     D   +++ NYYPPCP P+  LG   H D +ALT+L
Sbjct:   42 IPEPFVWPNGDARPASAA----ELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGT--VSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADY-FSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFA--DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTIL 258          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 65/226 (28.76%), Postives = 91/226 (40.27%), Query Frame = 1
Query:  142 IPAEFVRPEKE-QPASATYHGPAPEIPTIDL------DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHL---FH-RVWPPSSINYRFWPNNPPSYRAVNEEYAKY---MREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVL 777
            IP  FV P  + +PASA       ++P +D+      D     R    +A A    G FQV+ HG+ + L         +FF LP  EK    R      V GY +        K  W + L   FH R   P   +Y F     P +  +   Y KY   M+E+   +               +E     D   +++ NYYPPCP P+  LG   H D +ALT+L
Sbjct:   42 IPEPFVWPNGDARPASAA----ELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGT--VSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADY-FSSTLGPDFAPMGRVYQKYCEEMKELSLTIMELLELSLGVERGYYREFFA--DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTIL 258          
BLAST of CX069873 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 54/195 (27.69%), Postives = 84/195 (43.08%), Query Frame = 1
Query:  214 IPTIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPP--SSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDD-IEYMLKINYYPPCPRPDL----ALGVVAHTDLSALTVL 777
            IP +DL  P    L   I  A R++G F++ NHG+P +L+  L+     FF+  Q EK+    P    D  GYG+K +    G   WV++L     P   S  +   +  NP  +RAV E Y   ++ +   +                     D+  +   ++N+YPPCP         +G   HTD   ++VL
Sbjct:   27 IPVVDLTHPDAKNL---IVNACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDRAGPP----DPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVL 213          
The following BLAST results are available for this feature:
BLAST of CX069873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
G2OX1_PEA5.892e-1125.70Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
ACCO_ACTDE5.892e-1125.711-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO2_SOLLC5.892e-1124.571-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
GAOX2_ORYSJ7.696e-1128.76Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI7.696e-1128.76Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
G2OX_PHACN7.696e-1127.69Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13D05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D05-G9-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069873 ID=CX069873; Name=CX069873; organism=Citrus sinensis; type=EST; length=779bp
CACAGTCGCAGGAAAGGCGCAAGCCAAGAAAGAGAGAGGGAGAGAAGGAA
AAGAAAAGTGGTGGGGTTTTGCTGGAAAATAAAATTAATGGAGGTGGAGA
GGGTCCAAGCCATTGCTTCCTTATCCCATTCAAATGGCACAATTCCAGCA
GAGTTCGTAAGACCCGAAAAAGAACAGCCAGCAAGCGCAACGTACCACGG
CCCCGCTCCTGAAATCCCCACGATCGATCTCGACGACCCCGTTCAAGACA
GACTCGTACGTTCCATCGCGGAAGCCAGCCGGGAGTGGGGGATTTTCCAG
GTTACAAACCACGGGATACCTAGTGACCTCATCGGTAAACTGCAAGCCGT
CGGCAAAGAATTTTTTGAGCTCCCTCAGGAAGAGAAAGAAGTGTATTCTC
GTCCGGCTGATGCAAAAGACGTGCAAGGATACGGCACAAAGTTACAGAAA
GAAGTCGAAGGAAAGAAATCTTGGGTTGATCATCTCTTCCACAGGGTTTG
GCCTCCGTCTTCTATCAACTACCGCTTTTGGCCCAACAACCCTCCTTCTT
ACCGAGCGGTGAATGAGGAGTATGCAAAGTACATGAGGGAGGTGGTGGAT
AAGTTGTTTACGTATCTTTCGTTGGGACTGGGTGTCGAAGGAGGTGTTTT
GAAAGAAGCAGCGGGAGGAGACGACATTGAGTACATGCTCAAGATTAATT
ACTATCCGCCATGCCCACGTCCTGATCTTGCTCTTGGAGTGGTGGCCCAC
ACTGATCTTTCCGCCCTCACCGTTCTTGT
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