DR404085 | Citrus Genome Database

Overview


Name	DR404085
Unique Name	DR404085
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	686

Libraries


Library Name	Type
Developing fruit juice sac at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_NYMAL (ATP synthase subunit c, chloroplastic OS=Nymphaea alba GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_NUPAD (ATP synthase subunit c, chloroplastic OS=Nuphar advena GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_NICTO (ATP synthase subunit c, chloroplastic OS=Nicotiana tomentosiformis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_NICSY (ATP synthase subunit c, chloroplastic OS=Nicotiana sylvestris GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_NASOF (ATP synthase subunit c, chloroplastic OS=Nasturtium officinale GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_NANDO (ATP synthase subunit c, chloroplastic OS=Nandina domestica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_MORIN (ATP synthase subunit c, chloroplastic OS=Morus indica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_MARPO (ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_MANES (ATP synthase subunit c, chloroplastic OS=Manihot esculenta GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_LOBMA (ATP synthase subunit c, chloroplastic OS=Lobularia maritima GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of DR404085 vs. ExPASy Swiss-Prot

BLAST of DR404085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_NYMAL	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nymphaea ...	[more]
ATPH_NUPAD	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nuphar ad...	[more]
ATPH_NICTO	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_NICSY	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_NASOF	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nasturtiu...	[more]
ATPH_NANDO	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nandina d...	[more]
ATPH_MORIN	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Morus ind...	[more]
ATPH_MARPO	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Marchanti...	[more]
ATPH_MANES	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Manihot e...	[more]
ATPH_LOBMA	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Lobularia...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAG-PNP1245D21 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245D21 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404085 ID=DR404085; Name=DR404085; organism=Citrus sinensis; type=EST; length=686bp
GGGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGA
GGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTG
GGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACT
GCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGG
AAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAA
CAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTT
GTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTAT
TTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTC
CTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACC
AGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATTC
AAAGAAAGGATTTCGAAATCGAATTTTTGACCCTGTTTCGAAATAGGTAA
ATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA