DR404085 | Citrus Genome Database

Overview


Name	DR404085
Unique Name	DR404085
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	686

Libraries


Library Name	Type
Developing fruit juice sac at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4081	contig	Csv1_Contig4081:864..1549.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_EUCGG (ATP synthase subunit c, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_DRIGR (ATP synthase subunit c, chloroplastic OS=Drimys granadensis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_DIOEL (ATP synthase subunit c, chloroplastic OS=Dioscorea elephantipes GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_DAUCA (ATP synthase subunit c, chloroplastic OS=Daucus carota GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_CUSRE (ATP synthase subunit C, plastid OS=Cuscuta reflexa GN=atpE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_CUSEX (ATP synthase subunit C, plastid OS=Cuscuta exaltata GN=atpE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_CUCSA (ATP synthase subunit c, chloroplastic OS=Cucumis sativus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_COFAR (ATP synthase subunit c, chloroplastic OS=Coffea arabica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_CITSI (ATP synthase subunit c, chloroplastic OS=Citrus sinensis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of DR404085 vs. ExPASy Swiss-Prot
Match: ATPH_CHLSC (ATP synthase subunit c, chloroplastic OS=Chloranthus spicatus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:   61 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 303
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of DR404085 vs. ExPASy Swiss-Prot

BLAST of DR404085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_EUCGG	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Eucalyptu...	[more]
ATPH_DRIGR	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Drimys gr...	[more]
ATPH_DIOEL	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Dioscorea...	[more]
ATPH_DAUCA	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Daucus ca...	[more]
ATPH_CUSRE	3.385e-25	80.25	ATP synthase subunit C, plastid OS=Cuscuta reflexa...	[more]
ATPH_CUSEX	3.385e-25	80.25	ATP synthase subunit C, plastid OS=Cuscuta exaltat...	[more]
ATPH_CUCSA	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Cucumis s...	[more]
ATPH_COFAR	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Coffea ar...	[more]
ATPH_CITSI	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Citrus si...	[more]
ATPH_CHLSC	3.385e-25	80.25	ATP synthase subunit c, chloroplastic OS=Chloranth...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAG-PNP1245D21 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245D21 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404085 ID=DR404085; Name=DR404085; organism=Citrus sinensis; type=EST; length=686bp
GGGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGA
GGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTG
GGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACT
GCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGG
AAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAA
CAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTT
GTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTAT
TTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTC
CTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACC
AGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAATTC
AAAGAAAGGATTTCGAAATCGAATTTTTGACCCTGTTTCGAAATAGGTAA
ATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA