CX069872

Overview
NameCX069872
Unique NameCX069872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 103/235 (43.83%), Postives = 144/235 (61.28%), Query Frame = -3
Query:  138 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLF-TYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKNN 836
            +QGYG+KL     G+  W D+ FH  +P    +   WP  P  Y     EYAK +R +  K+F               KE  G +++   +KINYYP CP+P+LALGV AHTD+SALT ++ N VPGLQ+F + +W+ AK +P+++++HIGD +EILSNGKYK++LHR  VNK+K R+SW VF EPP D +V  PLP++V  E+P K+  + F  +   KL    Q     EKN+
Sbjct:  122 IQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEKND 356          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.431e-53
Identity = 98/226 (43.36%), Postives = 143/226 (63.27%), Query Frame = -3
Query:  165 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGG-DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 836
            +QGYG+KL     G+  W D+ FH V+P    +   WP  P  Y     EYAK +RE+  K+              L++  GG +++   +KINYYP CP+P+LALGV AHTD+SALT ++ N VPGLQ+F + +W+ AK +PN++++HIGD +EILSNGKYK++LHR  VNK+K R+SW VF EPP + ++  PLP+ V ++ P  +  + F ++   KL +  Q
Sbjct:  126 IQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKVRISWAVFCEPPKEKIILKPLPETVSEDEPAMFPPRTFAEHIQHKLFRKSQ 351          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.877e-48
Identity = 95/235 (40.43%), Postives = 137/235 (58.30%), Query Frame = -3
Query:  165 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLK----------EAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTV-VGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 836
            +QGYG++L     G++ W D+LFH V P    ++  WP  PP Y A   ++ +  R++   L                            A  DD+   LKINYYP CP+P+LA+GV AHTD+SAL+ ++ N VPGLQV    RW+ A++ P  +I+H+GD +EILSNG+Y +VLHR  VN++  R+SW VF EPP D+V + PLP+LV + +P ++  + FK +   KL K  Q
Sbjct:  135 LQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFILHNGVPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARFTPRTFKQHLDRKLFKKKQ 369          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.822e-47
Identity = 86/192 (44.79%), Postives = 123/192 (64.06%), Query Frame = -3
Query:  264 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGG-DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV 836
            + GYG+KL     G+  W D+ FH ++P    +   WP  P  Y     EY+  +R +  K+ +            L++  GG +++    KINYYP CP+P+LALGV AHTD+SALT ++ N VPGLQ+F + +W+ AK +PN++I+HIGD IEILSNGKYK++LHR  VNK+K R+SW VF EPP + ++
Sbjct:  128 IAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKII 319          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.664e-33
Identity = 76/228 (33.33%), Postives = 121/228 (53.07%), Query Frame = -3
Query:  165 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIE---YMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD-RWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 836
            V GYG         KK W +  F  +  P     + WP++   Y  + EEY ++M+++  KL  +           ++ A    D +    ++++N+YP CP PD A+G+ AHTD + +T+L  N   GLQVF+DD  W+ A  +P +L++++GD + IL+NG + +VLHR  VN  ++R S      PP+D ++ PLP+LVD    P Y +  +K Y   K     Q
Sbjct:  114 VSGYGVARIASFFNKKMWSEG-FTVIGSPLHDFRKLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSMAYLWGPPSDIMISPLPKLVDPLQSPLYPSLTWKQYLATKATHFNQ 340          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 78/241 (32.37%), Postives = 124/241 (51.45%), Query Frame = -3
Query:  126 VQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYM---LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDR-WIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKNNTSIR 836
            V GYG         K+ W +  F     P +   + WP +  +Y  + EEY ++M+++  KL              ++ A+   D+ +    L++N+YP CP PD A+G+ AHTD + LT+L  N   GLQVF+DD  W+     P +L++++GD   ILSNG +K+VLHR  VN+ + R+S      P +D  + P+P+LV     P Y++  +K+Y   K         H+ K  + IR
Sbjct:  121 VSGYGVARIASFFNKQMWSEG-FTITGSPLNDFRKLWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKAT-------HFNKALSMIR 353          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.849e-31
Identity = 71/217 (32.72%), Postives = 112/217 (51.61%), Query Frame = -3
Query:  192 DVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYS 839
            +++G+G       + K  W D  FH V P        +P  P  +R   E Y+  ++ V   L              L++     D    +++NYYPPCP+PD  +G+  H+D   LTVL+  N+V GLQ+ KD +W+  K +PNA I++IGD +EI++NG Y+++ HR  VN +K R+S   F        VGP   LV+ +   ++K    K+Y+
Sbjct:  123 EIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYN 339          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.192e-29
Identity = 74/202 (36.63%), Postives = 112/202 (55.45%), Query Frame = -3
Query:  195 WVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 785
            W    F R  P S+I+    P+    YR V  ++AK + ++ ++L              LK+A  G     +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KDD+WID   + ++++I++GDQ+E+++NGKYK+V HR     D TRMS   F  P +D V+ P P LV+   +EN   Y    F DY
Sbjct:   86 WESTFFLRHLPVSNISEV--PDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLEVITNGKYKSVPHRVIAQTDGTRMSLASFYNPASDAVIYPAPALVERDAEENKQIYPKFVFDDY 285          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 70/199 (35.18%), Postives = 110/199 (55.28%), Query Frame = -3
Query:  195 WVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 785
            W    F R  P S+I+    P+    YR V  ++AK + ++ ++L              LK A  G     +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD++WID   + +++++++GDQ+E+++NGKYK+V+HR     D TRMS   F  P  D V+ P P L+ +E+   Y    F DY
Sbjct:   86 WESTFFLRHLPTSNISQV--PDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGTRMSLASFYNPGNDAVIYPAPSLI-EESKQVYPKFVFDDY 281          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.717e-28
Identity = 74/206 (35.92%), Postives = 113/206 (54.85%), Query Frame = -3
Query:  180 WVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKA--KKFKDYSYCKL 785
            W    F R  P S+I+    P+    YR V  ++AK + ++ ++L              LK+A  G     +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   + +++++++GDQ+E+++NGKYK+VLHR     D TRMS   F  P +D V+ P P LV+ E   + K    KF    Y KL
Sbjct:   86 WESTFFLRHLPVSNISEV--PDLDDEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAPTLVEKEADQECKQVYPKFVFDDYMKL 289          
The following BLAST results are available for this feature:
BLAST of CX069872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
LDOX_ARATH1.095e-5343.83Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
LDOX_MALDO1.431e-5343.36Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
LDOX_MAIZE6.877e-4840.43Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
LDOX_VITVI5.822e-4744.79Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
G3OX2_ARATH3.664e-3333.33Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX1_ARATH1.539e-3132.37Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
SRG1_ARATH5.849e-3132.72Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
ACCO4_PETHY4.192e-2936.631-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO4_SOLLC2.717e-2835.181-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO3_PETHY2.717e-2835.921-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D05-G9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069872 ID=CX069872; Name=CX069872; organism=Citrus sinensis; type=EST; length=847bp
CTTTTTTTTTAAAATGAAAGGATTATTTATTATTGCTAACACCCGCGATT
ACATTTCAGAAACAAGATCGCAACAACAAACAAGCATCGCTAACGTACAG
TGACGAGATCAAACATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCA
TAATGAAAAATCTACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATC
CTTGAACTTCTTGGCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCT
GAGGAAGGGGACCCACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGC
CACGACATTCTCGTCTTGTCCTTGTTAACAGTGGTTCTATGCAGCACGGC
TTTGTACTTGCCATTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGA
TGAGAGCGTTCGGGATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAG
ACTTGCAGACCAGGAACTTCATTGGGCACAAGAACGGTGAGGGCGGAAAG
ATCAGTGTGGGCCACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCG
GATAGTAATTAATCTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCT
TCTTTCAAAACACCTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAA
CAACTTATCCACCACCTCCCTCATGTACTTTGCATACTCCTCATTCACCG
CTCGGTAAGAAGGAGGGTTGTTGGGCCAAAAGCGGTAGTTGATAGAAGAC
GGAGGCCAAACCCTGTGGAAGAGATGATCAACCCAAGATTTCTTTCCTTC
GACTTCTTTCTGTAACTTTGTGCCGTATCCTTGCACGTCTTTTGCAT
back to top