CX069872

Overview
NameCX069872
Unique NameCX069872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.465e-22
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = -3
Query:  219 DDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 587
            ++ + ++++NYYPPC +PDL LG   H D ++LT+L  + V GLQVF +++W   +  P A +++IGD    LSN +YK+ LHR  VN +  R S   FL P  D VV P  +L+D     +Y
Sbjct:  221 EENDSIMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRY 343          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.465e-22
Identity = 69/210 (32.86%), Postives = 96/210 (45.71%), Query Frame = -3
Query:  219 GYGTKLQKEVEGKKSWVDHLFHRVWP--PSSINYRFWPNNPPSYRAVNEEYAKYMREV----VDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 830
            GY +        K  W + L  R  P  P+ +           +R + E YA+Y  E+    ++ +               +   G D I   +++NYYPPC RP   LG   H D ++LT+L  + V GLQV  + RW   +   +A +++IGD    LSNG+YK+ LHR  VN    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  114 GYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSI---MRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAY 320          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 69/210 (32.86%), Postives = 96/210 (45.71%), Query Frame = -3
Query:  219 GYGTKLQKEVEGKKSWVDHLFHRVWP--PSSINYRFWPNNPPSYRAVNEEYAKYMREV----VDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 830
            GY +        K  W + L  R  P  P+ +           +R + E YA+Y  E+    ++ +               +   G D I   +++NYYPPC RP   LG   H D ++LT+L  + V GLQV  + RW   +   +A +++IGD    LSNG+YK+ LHR  VN    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  114 GYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSI---MRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.166e-21
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = -3
Query:  219 MLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 572
            ++++NYYP C RP   LG   H D ++LT+L  + V GL+V+ + RW   +  P AL++++GD    LSN +Y++ LHR  VN    R S   FL P  DTVV P  +LVDD +P  Y
Sbjct:  213 IMRLNYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVY 330          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  264 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV 569
            L++N YPPCP+P    G++ HTD   LT+L  ++V GLQ+ KD+RWI  K  P ALII+IGD  +  SNG YK+V HR   N    R S   F+ P  D V+
Sbjct:  195 LRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVI 296          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = -3
Query:  255 EGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPL 800
            E  + W + + +  +P  + +Y  WP  P  + AV E Y++ +  +   L              L +A    D++  + +N+YP CP+PDL LG+  HTD   +T+L+ + V GLQ  +D    WI  + I  A ++++GD    +SNG++K   H+  VN + +R+S   F  P  D  V PL
Sbjct:  125 EAVQDWREIVTYFSYPVKARDYGRWPEKPAGWCAVVERYSERLMGLSCNLMGVLSEAMGLETEALAKACV--DMDQKVVVNFYPRCPQPDLTLGLKRHTDPGTITLLLQDLVGGLQATRDGGKNWITVQPISGAFVVNLGDHGHFMSNGRFKNADHQAVVNGESSRLSIATFQNPAPDARVWPL 306          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.265e-17
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = -3
Query:  216 EYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVN-KDKTRMSWPVF----LEPPADTVVGPLPQLVDDENPPKYK 689
            EY+K + ++ + +F             LKE      + +ML  + +PPCP P+   G   HTD S LT+L+ +   GLQV  D  WID    P ALI ++GD ++++SN K+ ++ HR   N  ++ R+S   F       P+  V GP+ +L+ + NPPKY+
Sbjct:  173 EYSKEVMKLAELMFEILSEALGLSPNHLKEMDCAKGL-WML-CHCFPPCPEPNRTFGGAQHTDRSFLTILLNDNNGGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFFVHTFTSPSSRVYGPIKELLSELNPPKYR 333          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.116e-16
Identity = 61/230 (26.52%), Postives = 104/230 (45.22%), Query Frame = -3
Query:  177 GYG-TKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWP--NNPPSYRAVNEEYAKYMREVV-DKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDL-------ALGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLN 830
            GYG +K+ +   G   WV++L       S     F     +P ++R   EEY   +R++  D L              L +     + + +L++N+YPPCP  +         +G   HTD   ++VL  N   GLQ+   D  WI       +   ++GD +++++NG++K+V HR   N  K+R+S   F  P     + PL  L+D+E+   Y+   + +Y     N
Sbjct:   81 GYGNSKIGRN--GDVGWVEYLLMNANHDSGSGPLFPSLLKSPGTFRNALEEYTTSVRKMTFDVLEKITDGLGIKPRNTLSKLVSDQNTDSILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFTWSEYKNSTYN 308          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.876e-15
Identity = 58/230 (25.22%), Postives = 103/230 (44.78%), Query Frame = -3
Query:  174 DVQGYGTKLQKEVEGKKSWVDHLFHRVWPP--SSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDD-IEYMLKINYYPPCPRPDLA----LGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNK 839
            D  GYG+K +    G   WV++L     P   S  +   +  NP  +RAV E Y   ++ +   +                     D+  +   ++N+YPPCP         +G   HTD   ++VL  N   GLQ+   D  W+       +  I++GD +++++NG++K+V HR   +  K+R+S   F  P     + PLP ++      K +   +K++++C+  K
Sbjct:   88 DPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSMIYFGGPALSENIAPLPSVM-----LKGEECLYKEFTWCEYKK 311          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.002e-14
Identity = 58/219 (26.48%), Postives = 99/219 (45.21%), Query Frame = -3
Query:  195 GYGTKLQKEVEGKKSWVDHLFHRVWPPSSI--NYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDD-IEYMLKINYYPPCPRPD---LALGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 830
            GYG K +    G   W+++L     P  S       +   P  +R   EEY K ++EV  K+                     D+  +  L++N+YP         + +G   HTD   ++VL  N   GLQ+  KD  W+      ++  I++GD +++++NG++K+V HR   +  ++R+S   F  PP    + PLP LV +++   YK   +  Y
Sbjct:   95 GYGNK-RIGPNGDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFTWSQY 312          
The following BLAST results are available for this feature:
BLAST of CX069872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAOX1_ARATH8.465e-2240.65Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
GAO1A_WHEAT8.465e-2232.86Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAO1D_WHEAT1.106e-2132.86Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAOX1_ORYSJ7.166e-2142.37Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G2OX8_ARATH4.645e-2047.06Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
FL3H_HORVU4.645e-2030.43Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
GSL_ARATH1.265e-1733.74Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G2OX1_ARATH3.116e-1626.52Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX_PHACN5.876e-1525.22Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX2_ARATH1.002e-1426.48Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D05-G9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069872 ID=CX069872; Name=CX069872; organism=Citrus sinensis; type=EST; length=847bp
CTTTTTTTTTAAAATGAAAGGATTATTTATTATTGCTAACACCCGCGATT
ACATTTCAGAAACAAGATCGCAACAACAAACAAGCATCGCTAACGTACAG
TGACGAGATCAAACATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCA
TAATGAAAAATCTACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATC
CTTGAACTTCTTGGCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCT
GAGGAAGGGGACCCACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGC
CACGACATTCTCGTCTTGTCCTTGTTAACAGTGGTTCTATGCAGCACGGC
TTTGTACTTGCCATTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGA
TGAGAGCGTTCGGGATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAG
ACTTGCAGACCAGGAACTTCATTGGGCACAAGAACGGTGAGGGCGGAAAG
ATCAGTGTGGGCCACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCG
GATAGTAATTAATCTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCT
TCTTTCAAAACACCTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAA
CAACTTATCCACCACCTCCCTCATGTACTTTGCATACTCCTCATTCACCG
CTCGGTAAGAAGGAGGGTTGTTGGGCCAAAAGCGGTAGTTGATAGAAGAC
GGAGGCCAAACCCTGTGGAAGAGATGATCAACCCAAGATTTCTTTCCTTC
GACTTCTTTCTGTAACTTTGTGCCGTATCCTTGCACGTCTTTTGCAT
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