CX069872

Overview
NameCX069872
Unique NameCX069872
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 56/221 (25.34%), Postives = 99/221 (44.80%), Query Frame = -3
Query:  195 DVQGYGTKLQKEVEGKKSWVDHLF--HRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDK-LFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLA--LGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 839
            D  GYGTK +    G   W++++     +   S      + + P  +R   EEY K M+ +  K L              L       + +  L++N+YP      +   +G   HTD   +++L  N+  GLQ+  KD  W+D     ++  + +GD +++++NG++K+V HR   N  ++R+S   F  PP    + PL  LV  ++   Y    +  Y
Sbjct:   88 DPFGYGTK-RIGPNGDLGWLEYILLNANLCLESHKTTAIFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQY 307          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.485e-14
Identity = 51/220 (23.18%), Postives = 100/220 (45.45%), Query Frame = -3
Query:  189 GYGTKLQKEVEGKKSWVDHLFHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGD-DIEYMLKINYYPPCPRPDL----ALGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSY 830
            GYG K +  + G   W+++L   +      N+  +  +   +R + ++Y   MR +  ++              +      D   + + ++N+YP CP   +     +G   HTD   +++L  N   G Q+  +D  WI      ++  I++GD +++++NG++K+V HR   N    R+S   F  PP    + PLP L+      K K   +K++++
Sbjct:   91 GYGNK-RIGLNGDIGWIEYLL--LTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLM------KGKESLYKEFTW 301          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 42/141 (29.79%), Postives = 69/141 (48.94%), Query Frame = -3
Query:  195 MLKINYYPPCPR--------------PDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDR-WIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 572
            +L+IN+YPP  +               +  +G   H+D   LT+L  N V GLQ+      WI     P+   + +GD +++L+NG++ +V HR   N  K RMS   F  PP + ++ PL ++V   +P  Y+   +  Y
Sbjct:  174 LLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTWAQY 314          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 42/125 (33.60%), Postives = 65/125 (52.00%), Query Frame = -3
Query:  195 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 569
            L++N Y P        G+V HTD S LT+L  +++ GL++  + +WI  K    AL ++IGD  + LSNG Y++V HR     +  RMS   F+ P  +T +           P KY+   F++Y
Sbjct:  196 LRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEIDCFGY------PKKYRRFSFREY 314          
BLAST of CX069872 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.311e-11
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  246 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFK--DDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQL 569
            +++  YP  P     LGV  HTD  ALT++  + V GL++     + ++     P ALI ++GD + IL+N +YK+ +HR   N    R + P FL+   D VV PLP L
Sbjct:  259 IRLLRYPSSPN---RLGVQEHTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGL 365          
The following BLAST results are available for this feature:
BLAST of CX069872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX3_ARATH8.485e-1425.34Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX1_PEA8.485e-1423.18Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX2_PEA1.600e-1229.79Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
G2OX7_ARATH2.730e-1233.60Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
ISP7_SCHPO2.311e-1136.36Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13D05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13D05-G9-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069872 ID=CX069872; Name=CX069872; organism=Citrus sinensis; type=EST; length=847bp
CTTTTTTTTTAAAATGAAAGGATTATTTATTATTGCTAACACCCGCGATT
ACATTTCAGAAACAAGATCGCAACAACAAACAAGCATCGCTAACGTACAG
TGACGAGATCAAACATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCA
TAATGAAAAATCTACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATC
CTTGAACTTCTTGGCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCT
GAGGAAGGGGACCCACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGC
CACGACATTCTCGTCTTGTCCTTGTTAACAGTGGTTCTATGCAGCACGGC
TTTGTACTTGCCATTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGA
TGAGAGCGTTCGGGATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAG
ACTTGCAGACCAGGAACTTCATTGGGCACAAGAACGGTGAGGGCGGAAAG
ATCAGTGTGGGCCACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCG
GATAGTAATTAATCTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCT
TCTTTCAAAACACCTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAA
CAACTTATCCACCACCTCCCTCATGTACTTTGCATACTCCTCATTCACCG
CTCGGTAAGAAGGAGGGTTGTTGGGCCAAAAGCGGTAGTTGATAGAAGAC
GGAGGCCAAACCCTGTGGAAGAGATGATCAACCCAAGATTTCTTTCCTTC
GACTTCTTTCTGTAACTTTGTGCCGTATCCTTGCACGTCTTTTGCAT
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