DR404082

Overview
NameDR404082
Unique NameDR404082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1398 contig Csv1_Contig1398:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 67/136 (49.26%), Postives = 99/136 (72.79%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            M K +KP K V++L+G+YAGRKAV+VK  D+G  +R Y H ++AGI +YP KV +    KK  K+++++ F+K+V+Y HL+PTRY++DV   K  ++ ++L++  KK  A  E K + EER+KTGKN+WFFTKLRF
Sbjct:    1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 64/136 (47.06%), Postives = 100/136 (73.53%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ A++SRV+ F+K+VNY HLMPTRY L++D LK +++AD+ +   ++  A K  KK  EE++++GK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.064e-33
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            M KF+K  K  I+++GRYAG+K VIVK  D+GT+   + H +VAGI++ P KV +K  AKK  K+++V+ FVKLVNY HLMPTRY+LDV+  K  V++++L+   ++  A K  KK  EE+ + GKN+WFF KL F
Sbjct:    1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 63/136 (46.32%), Postives = 96/136 (70.59%), Query Frame = 2
Query:   62 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            MVK LKP K  ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ AK+SRV+ F+K++NY HLMPTRY L++D LK +V+  +     ++  A K  K   EE+++TGK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136          
BLAST of DR404082 vs. ExPASy Swiss-Prot
Match: RL27_DICDI (60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.621e-32
Identity = 70/142 (49.30%), Postives = 94/142 (66.20%), Query Frame = 2
Query:   68 KFLKPNKAVILLQGRYAGRKAVIVKSFDDGT--RERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVRAFVKLVNYQHLMPTRYTLD-------VDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 466
            KF+KP + VILL G+YAGRKAV++K+FDD T  + R YGHCLVAGI KYP  ++R  S K   K++ +R+FVK+VNY H+MPTRY  +         LK+ V+ +S Q   K+       KK  E + K GK++WFF+KLRF
Sbjct:    4 KFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVA-KRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF 144          
The following BLAST results are available for this feature:
BLAST of DR404082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_CAEEL3.658e-3449.2660S ribosomal protein L27 OS=Caenorhabditis elegan... [more]
RL27A_SCHPO3.658e-3447.0660S ribosomal protein L27-A OS=Schizosaccharomyces... [more]
RL27_CANAL1.064e-3350.0060S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27B_SCHPO9.009e-3346.3260S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27_DICDI2.621e-3249.3060S ribosomal protein L27 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245D18 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245D18 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404082 ID=DR404082; Name=DR404082; organism=Citrus sinensis; type=EST; length=654bp
GGGGGGCACAAACACACTAAACCCAGAGAGAGCCGCGGGTGNNNNAGGAG
CGAGAGTTGAAATGGTGAAGTTTCTGAAACCAAACAAGGCCGTGATCCTT
CTTCAGGGCCGTTACGCCGGCCGGAAGGCGGTGATCGTGAAGTCGTTCGA
CGACGGGACCCGCGAGAGGGCGTACGGGCACTGTTTGGTAGCGGGGATAA
AGAAGTACCCGGGCAAGGTCATCCGCAAGGACTCGGCGAAGAAGACAGCG
AAGAAGTCACGCGTCAGGGCCTTCGTCAAGTTGGTCAACTACCAGCACCT
GATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGGACGTCGTGTCGG
CCGATTCCCTCCAGAGCAAGGACAAGAAGGTGACCGCTTGCAAGGAGACC
AAGAAGCGCCTCGAGGAGAGGTTTAAGACTGGCAAGAATCGTTGGTTCTT
TACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGAAAACGACTTGTG
TTTTTGTTTTGTTTTATTTTGTGTTATTGAAAACGCTTTAGTTGTTAAAG
TGCGAATTTTGAGATTTATGTAGTTTTTTGTGAACTTAATTTTATTTCTG
GATCTGGTACTATTTTTATGTGATAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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