CX069861

Overview
NameCX069861
Unique NameCX069861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:485..1170. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069861 vs. ExPASy Swiss-Prot
Match: THI4_PYRIL (Putative thiazole biosynthetic enzyme OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 66/212 (31.13%), Postives = 104/212 (49.06%), Query Frame = 2
Query:    2 IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 628
            + + E+  S GGG   GG +   +VV++ A   L +  I Y    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+    S +DP   +AK V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+ V GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:   48 VVVYERRFSFGGGIGPGGNMIPKIVVQEEAVPVLRDFKIRYKPVGDGLYTVDPAELIAKLAAGAIDA--GAKIILGVHVDDVIFRGDPPRVVGLLWVWTPIQMSG---SHVDPLYTQAKAVLDATGHDAEVISIAARKVPELGI--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYVAGMAVCTVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CX069861 vs. ExPASy Swiss-Prot
Match: THI4_DESMR (Putative thiazole biosynthetic enzyme OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=DMR_31420 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 69/218 (31.65%), Postives = 117/218 (53.67%), Query Frame = 2
Query:    2 IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKR--LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQK-AAHLALKSLG 631
            +A+ E+ +S GGG W GG  F+ +VV++ +   L ++G+     +DNY      A  T+   +  LA    K+FN ++ ED++++      RV G+V N + V +       +DP V+ +K +V + GH      T V++  ++       + G +++  ++AE   V+ TRE+ PG+ V GM      G+ RMGP FG M++SG+K AA +A K  G
Sbjct:   51 VALFERKLSLGGGMWGGGMTFNMIVVQEESVHLLTDVGVPVKRYKDNYFTADAVAATTTLASAACLA--GAKIFNCMSVEDVMLREENGVKRVTGIVINSSPVEI---AGLHVDPVVLGSKYLVEATGHAVEVLQTLVRKNDVRLNTPSGGIEGEQSMWADTAEINTVKNTREIFPGLYVAGMAANASYGSYRMGPIFGGMLLSGEKVAADIAAKLKG 263          
BLAST of CX069861 vs. ExPASy Swiss-Prot
Match: THI4_PYRAE (Putative thiazole biosynthetic enzyme OS=Pyrobaculum aerophilum GN=PAE0175 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.069e-18
Identity = 62/212 (29.25%), Postives = 103/212 (48.58%), Query Frame = 2
Query:    2 IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 628
            + + E+  S GGG   GG +   +VV++ A   L +  + Y   +D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  +V G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L
Sbjct:   48 VVVYERRFSFGGGIGPGGNMLPKIVVQEEAVPILRDFKVRYKPAEDGLYTVDPAELIAKLAAGAVDA--GAKIILGVHVDDVIFRGDPPRVTGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGI--QVVGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGKKVAEVVYKDL 252          
BLAST of CX069861 vs. ExPASy Swiss-Prot
Match: THI4_THENV (Putative thiazole biosynthetic enzyme OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1052 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 63/212 (29.72%), Postives = 103/212 (48.58%), Query Frame = 2
Query:    2 IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 628
            + + E+  S GGG   GG +   +VV++ A   L +  + Y    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+    S +DP   +A+ V+ + GHD    +   +++  +G+  EV G K+     +E  +V  T  V PG+   GM V  + G PRMGP FG M++SG++AA +  K L
Sbjct:   48 VVVYERRFSFGGGIGPGGNMIPKIVVQEEAVPVLKDFRVRYRPVGDGLYTVDPAELIAKLAAGAIDA--GAKIILGVHVDDVIFRGDPPRVAGLLWVWTPIQMSG---SHVDPLYTQARAVLDATGHDAEVISIASRKVPELGV--EVRGEKSAWAEVSEKLVVEHTGRVAPGLYAAGMAVCAVHGLPRMGPIFGGMLLSGRRAAEIIHKDL 252          
BLAST of CX069861 vs. ExPASy Swiss-Prot
Match: THI4_PYRCJ (Putative thiazole biosynthetic enzyme OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 60/214 (28.04%), Postives = 103/214 (48.13%), Query Frame = 2
Query:    2 IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 634
            + + E+  S GGG   GG +   +VV++ A   L +  + +    D    +  A L        + A    K+   V  +D+I +G   RV G++  W  + M+      +DP   +AK V+ + GHD    +   +++  +G+  ++ G K+     +E  +V  T  V PG+ V G+ V  + G PRMGP FG M++SG+K A +  K L +
Sbjct:   48 VLVFERRFSFGGGIGPGGNMIPKIVVQEEALPILKDFKVRFKPAGDGLYTVDPAELIAKLAAGAIDA--GAKILLGVHVDDVIFRGDPPRVAGLLWIWTPIQMSG---MHVDPLYTQAKAVIDATGHDAEVVSVAARKVPELGL--QLQGEKSAWSEVSEKLVVEHTGRVAPGLYVAGIAVCAVYGLPRMGPIFGGMLMSGRKVAEVVAKDLAE 254          
The following BLAST results are available for this feature:
BLAST of CX069861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_PYRIL6.183e-1931.13Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_DESMR1.378e-1831.65Putative thiazole biosynthetic enzyme OS=Desulfovi... [more]
THI4_PYRAE3.069e-1829.25Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_THENV4.008e-1829.72Putative thiazole biosynthetic enzyme OS=Thermopro... [more]
THI4_PYRCJ5.235e-1828.04Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13C09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C09-E17-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069861 ID=CX069861; Name=CX069861; organism=Citrus sinensis; type=EST; length=686bp
GATTGCTATTATCGAACAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCG
GTGGACAGCTCTTCTCTGCCATGGTTGTGCGCAAACCAGCCCACATCTTC
CTTGACGAGCTTGGCATCGACTACGATGAGCAAGACAACTATGTTGTGAT
CAAGCATGCAGCGCTGTTCACCTCCACTATAATGAGCAAGCTCCTGGCCC
GCCCCAACGTCAAGCTCTTTAATGCAGTGGCAGCCGAGGACTTGATAGTC
AAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACTGGGCGTTGGTGTCAAT
GAATCACGATACACAGTCTTGCATGGATCCCAATGTAATGGAAGCGAAGG
TGGTTGTGAGCTCTTGTGGCCATGATGGGCCTTTTGGGGCCACTGGAGTA
AAGAGGTTGAAGAGTATCGGAATGATTGAGGAAGTGCCTGGAATGAAGGC
ACTGGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTGACCAGGGAGG
TTGTGCCTGGTATGATAGTTACCGGCATGGAAGTTGCCGAGATTGATGGT
GCTCCTCGAATGGGGCCAACATTTGGAGCAATGATGATATCGGGGCAGAA
GGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAATGCATTAGACG
GTACATATGTGGGAGGCGTTCACCCTGAGCTGATCT
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