CX069856

Overview
NameCX069856
Unique NameCX069856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 3
Query:   18 LVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            LV    LVL C++ +  ++T A ++CGTV  +L  C+ Y++  G VPT CC+GV +L N AR+T DRQ  C+CL  A + +         AAGLP  CG+NIPY+IS +T+C+SV+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANAL--PTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            ++CG V   L PC++Y+   G +P  CCNGV+ L N+A +T DR+T CKCL  A   I  +   FG AAGLP KCG+NIPY+ISPST+C  V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSI--SGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQ---AVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            +TCG V + L PC+ YV  GGAVP  CCNG+R + N AR+T DR+T C CLKQ   ++SG+         AA LP KCG+NIPY+IS ST+C++V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNN-----AAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 3
Query:   33 ILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTN-CCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            ++V+  L+ +   S    VTCG VV+ L PC+ Y +   + PT  CC+GVRTL +AA +TADRQT C CLKQ  S +   R      AG+P+KCG+NIPY ISPSTDCS V
Sbjct:   13 VMVVALLLAAPAASA---VTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPD--LVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQ---AVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            +TCG V ++L PC++YV  GGAVP  CCNG+R + N AR+TADR+  C CLKQ   ++ G+         AA LP KCG+N+PY+IS ST+C++V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNN-----AAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   18 LVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            LV    LVL C++ +  ++T A ++CGTV  +L  C+ Y++  G +P  CC GV  L N AR+T DRQ  C+CL  A +  ++       AAGLP  CG+NIPY+IS ST+C+SV+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--SFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 47/112 (41.96%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   30 CILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            C+++ VC++ S      A ++CGTV   L PC +Y+S GG VP +CC GV+TL + A++T DRQ  C+C++     I  +      A+GLP KCG++IPY IS ST+C++++
Sbjct:   10 CLVLTVCIVASV----DAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSI--SGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 52/119 (43.70%), Postives = 75/119 (63.03%), Query Frame = 3
Query:    9 LMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            LMKL     LVL C++ +  +++ A ++CGTV   + PC+ Y++  G +P  CC GV  L N AR+T DRQ  C+CL  A +  ++       AAGLP  CG+NIPY+IS ST+C+SV+
Sbjct:    4 LMKLAC---LVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--SFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 3
Query:   18 LVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            LV    LVL C++ +  ++T A ++CGTV  +L  C+ Y++  G +P  CC GV  L N AR+T DRQ  C+CL  A +   +       AAGLP  CG+NIPY+IS ST+C+SV+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--AFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.835e-22
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 3
Query:   30 CILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            C L+L+  +    + T + +TCG V +DLT C+ Y   GG +P  CC GVRTL N A++T DRQT C CLK  V+            AG+P KCG+NIPY I   TDC+ V+
Sbjct:    8 CFLLLLAFL----IGTASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVN--PSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
The following BLAST results are available for this feature:
BLAST of CX069856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP3_BRANA5.917e-2344.83Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP5_VITSX7.728e-2352.17Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP1_PRUAR7.728e-2352.08Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_ORYSJ1.722e-2250.45Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP1_PRUDO1.722e-2250.00Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTPB_BRAOT2.248e-2243.97Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP3_ARATH2.936e-2241.96Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_BRANA2.936e-2243.70Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP1_BRANA2.936e-2243.97Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
SCA_LILLO3.835e-2244.64Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C06-E11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069856 ID=CX069856; Name=CX069856; organism=Citrus sinensis; type=EST; length=628bp
CCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGTTTGC
TTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGTGGCAC
GGTGGTGAATGACTTGACTCCATGCGTATCCTACGTGTCATACGGCGGGG
CCGTGCCGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGCCGCT
AGGTCCACAGCTGACCGTCAGACCGTGTGTAAGTGCTTGAAACAAGCTGT
TAGCGGAATCACGTACACCAGGTACCAGTTCGGATTCGCAGCTGGACTTC
CCGCCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTACCGAC
TGCAGCAGTGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTATGAGG
CTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCTGCGC
TTCTCTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCATCTG
GTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCATAAG
TACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGACATTTTGTT
ATTATGTGTTNNAAAAAAAAAAAAAAAA
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