CX069856

Overview
NameCX069856
Unique NameCX069856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.835e-22
Identity = 53/118 (44.92%), Postives = 78/118 (66.10%), Query Frame = 3
Query:   12 MKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPT-NCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            + +V   ++ LV L   A  +++A ++CG V + + PC+SY    G+ P+  CC+GVR+L NAAR+TADR+  C CLK A +G+  +    G AA +P+KCG++IPY IS STDCS V
Sbjct:    7 LAVVATAVVALVLL---AAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV--SGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.835e-22
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   48 CLMGSAFV--STKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            C + + F+  S  A +TCGTV + L+PC+ Y+S GG VP  CC GV+ L   A++T DRQ  C+CL+ A  G+  +      A+GLP KCG++IPY IS ST+C++++
Sbjct:   10 CFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPS-----LASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.116e-21
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 3
Query:   39 VLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            V++C++ +A       +TCG V ++L PC++Y+   G +   CC GV+ L N+AR+T DRQ  C CLK A   I+      G AAGLP+ CG+NIPY+ISPSTDCS VQ
Sbjct:   11 VVLCMVVAA--PCAEAITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS--GINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.457e-21
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   36 LVLVCLMGSAFV-----STKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            LVLV L+ +A +     +T A ++CG V + ++PC+SY   G      CC+GVR+L +AA +TADR+T C CLK     I  +    G AA +P+KCG++IPY ISPS DCSSV
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.457e-21
Identity = 53/114 (46.49%), Postives = 73/114 (64.04%), Query Frame = 3
Query:   36 LVLVCLMGSAFV-----STKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            LVLV L+ +A +     +T A ++CG V + ++PC+SY   G      CC+GVR+L +AA +TADR+T C CLK     I  +    G AA +P+KCG++IPY ISPS DCSSV
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSI--SGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 3
Query:    6 MLMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            M   +   C+++++C++ +     +  ++CG V  DL+PC++Y++ G      CC GV+ L  AA +T DRQ  C C+K A S I  T+     AA LP KCG+NIPY+IS ST+C++V+
Sbjct:    1 MARSMKLACVVLVMCMIVAPMA--EGAISCGAVTGDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSI--TKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            ++CG V   +  C++Y+   G +P  CCNGV+ L N+A +T DR+T CKCL  A    T +   FG AAGLPAKCG++IPY+ISPST+C  V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAACCNGVKNLKNSATTTQDRRTACKCLISASK--TISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   36 LVLVCLMGSAF-VSTKAQVTCGTVVNDLTPCVSYVSYGGAVP-TNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            LVLV ++ +   V+T A ++CG V + L+PC+SY    GA P   CC+GV+ L  AA+STAD+Q  CKC+K A  G+       G AAG+P+ CG+++PY IS S DCS ++
Sbjct:    9 LVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGGL-----NAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 3
Query:   36 LVLVCLMGSAF-VSTKAQVTCGTVVNDLTPCVSYVSYGGAVP-TNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            LVLV ++ +   V+T A ++CG V + L+PC+SY    GA P   CC+GV+ L  AA+STAD+Q  CKC+K A  G+       G AAG+P+ CG+++PY IS S DCS ++
Sbjct:    9 LVLVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGGL-----NAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 48/112 (42.86%), Postives = 74/112 (66.07%), Query Frame = 3
Query:   30 CILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            C+++++C++  A ++  A ++CG V +DL+PC++Y++ G      CC GV+ L  AA +T DRQ  C CLK A   I  T+     AA LP KCG+NIPY+IS ST+C++V+
Sbjct:    1 CVVLVMCMVVIAPMAEGA-ISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
The following BLAST results are available for this feature:
BLAST of CX069856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP_MAIZE3.835e-2244.92Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP4_ARATH3.835e-2244.44Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_TOBAC1.116e-2147.71Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP2_ORYSI1.457e-2146.49Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ1.457e-2146.49Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP5_LENCU1.903e-2139.17Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP3_VITSX1.903e-2150.00Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLT43_HORVU1.903e-2145.54Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU1.903e-2145.54Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP4_LENCU2.486e-2142.86Non-specific lipid-transfer protein 4 (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C06-E11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069856 ID=CX069856; Name=CX069856; organism=Citrus sinensis; type=EST; length=628bp
CCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGTTTGC
TTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGTGGCAC
GGTGGTGAATGACTTGACTCCATGCGTATCCTACGTGTCATACGGCGGGG
CCGTGCCGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGCCGCT
AGGTCCACAGCTGACCGTCAGACCGTGTGTAAGTGCTTGAAACAAGCTGT
TAGCGGAATCACGTACACCAGGTACCAGTTCGGATTCGCAGCTGGACTTC
CCGCCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTACCGAC
TGCAGCAGTGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTATGAGG
CTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCTGCGC
TTCTCTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCATCTG
GTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCATAAG
TACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGACATTTTGTT
ATTATGTGTTNNAAAAAAAAAAAAAAAA
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