CX069856

Overview
NameCX069856
Unique NameCX069856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.446e-21
Identity = 44/110 (40.00%), Postives = 73/110 (66.36%), Query Frame = 3
Query:   36 LVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            L+L C++ +  +++ A ++CG+V ++L  C+ YV  GG +P  CC+GV+ L + A++T DRQ  C C++ A   +  +    G AAG+P  CG+NIPY+IS ST+C +V+
Sbjct:   10 LLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALG-SGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.234e-20
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   63 AFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPT-NCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            A  +++A VTCG V + + PC+SY    G+ P+  CC+GVR+L +AAR+TADR+  C CLK A  GI       G AA +P+KCG++IPY IS STDCS V
Sbjct:   23 AATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGI--RGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.611e-20
Identity = 43/110 (39.09%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   36 LVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            LVL C++ +  ++    +TCGTV +++ PC+ Y++ GG +P  CC GV  L + AR+T DRQ  C+CL+ A   +       G AAG+P  CG+++P+ IS +T+C++V+
Sbjct:   10 LVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALG-PNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   39 VLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            VL+C++ +A  + +A +TCG V + L PC+ Y+  GG +   CC G++ L  AA +T DR+T C CLK A + I    Y  G AAGLP  CG++IPY ISPST+C++V
Sbjct:   13 VLLCIVVAAPYA-EAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINY--GKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 3
Query:   36 LVLVCLMGSAF-VSTKAQVTCGTVVNDLTPCVSYVSYGGAVP-TNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            LVLV ++ +   V+T A ++CG V + L+PC+SY    GA P   CC+GV+ L  AA+STAD+Q  C+CLK   + I       G  +G+P KCG+++P+ IS STDC+ V
Sbjct:    9 LVLVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSI--KGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 3
Query:   39 VLVCLMGSAFVSTKAQ-VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            VL+C++    V+  A+ +TCG V + L PC+ Y+   G +   CC GV+ L   A++T DRQT C CLK A S  ++T    G AA LP+ C +NIPY+ISPSTDCS VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAAS--SFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 3
Query:    9 LMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPT-NCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            + +L     +V   ++  A  +++A ++CG V + +  C+SY    G  P+  CC+GVR+L +AAR+TADR+  C CLK A  GI  +    G AA +P+KCG+++PY IS STDCS V
Sbjct:    1 MARLAVAIAVVAAVVVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGI--SGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = 3
Query:   36 LVLVCLMGSAF-VSTKAQVTCGTVVNDLTPCVSYVSYGGAVPT-NCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            L LV L+ +   V+  A +TCG V + L PC +Y    G  P+  CC+GV+ L   ARSTAD+Q  C+CLK          Y  G AAG+P++CG+++PY IS S DCS +
Sbjct:    9 LALVALVAAMLLVAADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGA-----YNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQ---AVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            +TCG V  +L  C+ ++  GG VP +CC GV+ + N++R+TADR+ VC CLK    AV GI         A  LP KCG+NIPY+IS ST+C+S+
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNN-----AEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 3
Query:    9 LMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            +  L   C++ L+C++  +    +A ++CGTV   L PC++Y+  G      CC GV+ L  AAR+T DR+  C CLK +   I+  +   G  A LP KCG+ +PY IS ST+C++++
Sbjct:    1 MASLRVSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLKGGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKP--GNVATLPGKCGVRLPYTISTSTNCNTIR 117          
The following BLAST results are available for this feature:
BLAST of CX069856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP1_ARATH9.446e-2140.00Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP2_SORBI1.234e-2050.50Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTPA_BRAOT1.611e-2039.09Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP_SPIOL2.104e-2046.30Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP3_HORVU7.997e-2044.14Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP2_SOLPN7.997e-2047.27Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP1_SORBI1.044e-1941.18Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP8_HORVU1.781e-1943.24Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP1_PHAAU1.781e-1947.37Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP1_LENCU1.781e-1936.97Non-specific lipid-transfer protein 1 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C06-E11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069856 ID=CX069856; Name=CX069856; organism=Citrus sinensis; type=EST; length=628bp
CCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGTTTGC
TTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGTGGCAC
GGTGGTGAATGACTTGACTCCATGCGTATCCTACGTGTCATACGGCGGGG
CCGTGCCGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGCCGCT
AGGTCCACAGCTGACCGTCAGACCGTGTGTAAGTGCTTGAAACAAGCTGT
TAGCGGAATCACGTACACCAGGTACCAGTTCGGATTCGCAGCTGGACTTC
CCGCCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTACCGAC
TGCAGCAGTGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTATGAGG
CTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCTGCGC
TTCTCTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCATCTG
GTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCATAAG
TACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGACATTTTGTT
ATTATGTGTTNNAAAAAAAAAAAAAAAA
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