CX069856

Overview
NameCX069856
Unique NameCX069856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   15 KLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            K++T C++VL   M S    T++ + CGTV + L  C++Y++  G +P+ CC GV++LY  A++T DR+ VC+CLK  ++G           A LP  CG++IPY IS ST+C S+
Sbjct:    6 KIIT-CLIVLTIYMASP---TESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLK--LAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   39 VLVCLMGSAFVSTKAQ-VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            VL+C++    V+  A+ +TCG V + L PC+ Y+   G +   CC GV+ L   A++T DRQ  C CLK A S  ++T    G AA LP+ C +NIPY+ISPSTDCS VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAAS--SFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   36 LVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            +VL C++ +  ++  A ++CGTV  +L  C++Y++ G  +   CCNGV  L N A +T DRQ  C+CL+ A   +         AAGLP+ C +NIPY+IS ST+C++V+
Sbjct:   10 MVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVG-PGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19
Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 3
Query:    9 LMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            L+KL T   LV+VC++ +A ++++A ++CG V   L  C +Y++ GG +P  CC+GV+ L + AR+T DRQ  C+C++ A   +  +R   G AA LP  C + I Y IS  T+C++V+
Sbjct:    4 LLKLST---LVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALG-SRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            ++CG V + L PC+ Y+   G + + CC GV+ L  AA+S +DR+T C CLK A + I       G AAGLP  CG+NIPY+ISPSTDCS VQ
Sbjct:   25 LSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIK--GIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 3
Query:   12 MKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            MK+V  C+ +++C++ +     ++ +TCG V   L PC+ Y+  G      CC GVR L +AA +T DRQ  C CLK A   I  +R     AA LP KC +NIPY+IS ST+C++++
Sbjct:    4 MKVV--CVALIMCIVIAPMA--ESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSI--SRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 3
Query:   30 CILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            C LV+ C+M +A ++    +TCG V + L PC+ Y+         CC G+++L +AA S ADR+T C CLK A + I    Y  G AA LP +CG+++PY ISP+T+C+++
Sbjct:   11 CALVM-CMMVAAPLAEA--ITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINY--GKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 3
Query:   51 LMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            LM +A       + CG V + + PC++YV  G      CCNGVR L+N A+S+ DRQTVC CLK    GI         AA +P+KC +N+PY ISP  DCS +
Sbjct:   15 LMLTAAPRAAVALNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGI--HNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   36 LVLVCLMGSAFVSTK---AQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            LVLV L+ +  ++       +TCG V + + PC++Y   G      CC+GVR+L  AA +TADR+T C CLK A  GI       G AA +P+KCG+++PY IS S DCS V
Sbjct:    6 LVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGI--KGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   36 LVLVCLMGSAFVSTK---AQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            LVLV L+ +  ++       +TCG V + + PC++Y   G      CC+GVR+L  AA +TADR+T C CLK A  GI       G AA +P+KCG+++PY IS S DCS V
Sbjct:    6 LVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGI--KGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CX069856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTPC_ARATH3.039e-1940.52Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP2_SOLCI3.039e-1946.36Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP2_ARATH3.039e-1940.00Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP5_ARATH3.969e-1939.50Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP2_TOBAC3.969e-1950.54Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP_CICAR5.183e-1940.68Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP_BETVU5.183e-1941.44Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP1_HORVU5.183e-1944.23Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP1_ORYSJ8.841e-1943.75Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI8.841e-1943.75Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C06-E11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069856 ID=CX069856; Name=CX069856; organism=Citrus sinensis; type=EST; length=628bp
CCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGTTTGC
TTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGTGGCAC
GGTGGTGAATGACTTGACTCCATGCGTATCCTACGTGTCATACGGCGGGG
CCGTGCCGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGCCGCT
AGGTCCACAGCTGACCGTCAGACCGTGTGTAAGTGCTTGAAACAAGCTGT
TAGCGGAATCACGTACACCAGGTACCAGTTCGGATTCGCAGCTGGACTTC
CCGCCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTACCGAC
TGCAGCAGTGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTATGAGG
CTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCTGCGC
TTCTCTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCATCTG
GTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCATAAG
TACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGACATTTTGTT
ATTATGTGTTNNAAAAAAAAAAAAAAAA
back to top