CX069856

Overview
NameCX069856
Unique NameCX069856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1470 contig Csv1_Contig1470:40..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   24 TGCILVLVCLMGSAFVSTKAQ--VTCGTVVNDLTPCVSYVSYGGAVPTN-CCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            T  ++ LV ++ +A V+ +A   V+CG V + + PC+SYV    + P++ CC+GVRTL   A S+ADR+T C CLK   S  ++     G AA +P+KCG+++ + IS S DCS +
Sbjct:    7 TMALVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMAS--SFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   24 TGCILVLVCLMGSAFVSTKAQ--VTCGTVVNDLTPCVSYVSYGGAVPTN-CCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            T  ++ LV ++ +A V+ +A   V+CG V + + PC+SYV    + P++ CC+GVRTL   A S+ADR+T C CLK   S  ++     G AA +P+KCG+++ + IS S DCS +
Sbjct:    7 TMALVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMAS--SFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 3
Query:   39 VLVCLMGSAFVSTKAQ-VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            VL+C++    V+  A+ +TCG V   L PC+ Y+   G +   CC GV+ L  +A++TADR+T C CLK A + I         AAG+P+ C +NIPY+ISPSTDCS+VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIK--GIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            ++CG V + L PC+ Y+   G +   CC GV+ L  AA++  DR+T C CLK A + I       G AAGLP  CG+NIPY+ISPSTDCS+VQ
Sbjct:   25 LSCGEVTSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIK--GIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 3
Query:   39 VLVCLMGSAFVSTKAQ-VTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            VL+C++    V+  A+ +TCG V   L PC+ Y+   G +   CC GV+ L  +A++TADR+T C CLK A + I         AAG+P+ C +NIPY+ISPSTDCS+VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIK--GIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   12 MKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGA--VPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            M L   C++VL CL+  A ++  A ++   V + L PCV YV    A   P N C G+R+L +AAR   DRQ  CKC+K   + I+   Y  G AAGLP +C ++IPY+ISPS DC  V+
Sbjct:    5 MSLKLACVVVL-CLLVDAPLAQGA-ISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINY--GVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 3
Query:   39 VLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            V + LM +A       + CG V + + PC+SYV  G      CC+GV+ L+N ARS +DRQ+ C CLK    GI         A  +P KCG+N+PY IS + DCS V
Sbjct:    8 VALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGI--HNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 3
Query:   27 GCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            G  ++ + +M    V     +TC  V  +LTPC+ Y+  GG     CC G + L  A R+ ADR+T CKC K A   +   + +   A+ LP KCG++    I+P+ +C+++
Sbjct:    7 GVAILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL---KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 3
Query:    9 LMKLVTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTN--CCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPY--QISPSTDCSS 359
            LMKL  GC LV V ++ +  ++ KA ++CG V ++L PC  Y++ GG       CCNGVR L     +T DR+  C+C+K A   +         AAG+P +CG+ IPY  QI  +T C++
Sbjct:    4 LMKL--GC-LVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVG-PGLNADRAAGIPRRCGIKIPYSTQIRFNTKCNT 120          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVP--TNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            VTC  V   L PC++Y+   GA P   NCC GVR+L  AA++ ADR+  C C+K A        Y+   AA L ++CG+ + Y +SP+ +C+SVQ
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYK--VAARLASQCGVRMSYSVSPNVNCNSVQ 94          
The following BLAST results are available for this feature:
BLAST of CX069856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP3_ORYSJ1.155e-1840.52Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI1.155e-1840.52Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP1_SOLLC1.508e-1845.45Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP2_SOLLC1.970e-1849.46Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_SOLPN2.572e-1845.45Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP6_GOSHI3.360e-1843.33Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_WHEAT2.408e-1641.67Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP1_HELAN4.541e-1533.04Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP7_ARATH5.931e-1538.84Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP_AMACA7.746e-1542.11Non-specific lipid-transfer protein OS=Amaranthus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C06-E11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069856 ID=CX069856; Name=CX069856; organism=Citrus sinensis; type=EST; length=628bp
CCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGTTTGC
TTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGTGGCAC
GGTGGTGAATGACTTGACTCCATGCGTATCCTACGTGTCATACGGCGGGG
CCGTGCCGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGCCGCT
AGGTCCACAGCTGACCGTCAGACCGTGTGTAAGTGCTTGAAACAAGCTGT
TAGCGGAATCACGTACACCAGGTACCAGTTCGGATTCGCAGCTGGACTTC
CCGCCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTACCGAC
TGCAGCAGTGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTATGAGG
CTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCTGCGC
TTCTCTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCATCTG
GTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCATAAG
TACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGACATTTTGTT
ATTATGTGTTNNAAAAAAAAAAAAAAAA
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