CX069856

Overview
NameCX069856
Unique NameCX069856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1470 contig Csv1_Contig1470:40..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 37/112 (33.04%), Postives = 68/112 (60.71%), Query Frame = 3
Query:   36 LVLVCLMGSAFVS--TKAQVTCGTVVNDLTPCVSYVSYG-GAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            L ++ ++G  F+   +++ ++C  V+ DL PCVSY++ G G  P  CC+GV++L  A  ++AD++  C+C+K   + +T    +   A  L + CG ++P   SP+ DC++V
Sbjct:    7 LAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT---VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVP--TNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSVQ 365
            VTC  V   L PC++Y+   GA P   NCC GVR+L  AA++ ADR+  C C+K A        Y+   AA L ++CG+ + Y +SP+ +C+SVQ
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYK--VAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   87 VTCGTVVNDLTPCVSYVSYGGAVPT-NCCNGVRTLYNAARSTADRQTVCKC-LKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            ++CG V + + PC++Y    GA P+ +C +GVR+L  AAR+TADR+  C C LK A S +  +    G A+ +P +CG+ +PY IS S DCS V
Sbjct:    2 ISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRV--SGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.551e-13
Identity = 42/110 (38.18%), Postives = 56/110 (50.91%), Query Frame = 3
Query:   33 ILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPTNCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKCGLNIPYQISPSTDCSSV 362
            +LV+  L+G A+      + C  V   L  C+ Y+  GG     CCNG+ +L  AA   ADRQ  C CLK   +  T       FA  LPAKCG+NI    S + DC+S+
Sbjct:   13 LLVITILLGIAYHGEA--IACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVAN--TIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CX069856 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 3
Query:   21 VTGCILVLVCLMGSAFVSTKAQVTCGTVVNDLTPCVSYVSYGGAVPT-NCCNGVRTLYNAARSTADRQTVCKCLKQAVSGITYTRYQFGFAAGLPAKC---GLNIPYQISPSTDCSSV 362
            V G ++ ++ + G+  V  +  ++C  VV+ +TPC +Y+    A P   CC  +R L +  ++T DRQ VC CLK           + G AA LP  C    LN+P  ISP+ DCS V
Sbjct:   12 VVGLVVTMMNVWGA--VPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY---GVKLGKAANLPGLCKVTDLNVP--ISPNVDCSKV 122          
The following BLAST results are available for this feature:
BLAST of CX069856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP8_ARATH7.746e-1533.04Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP1_AMAHP7.746e-1542.11Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP_ELECO1.726e-1443.62Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTPB_ARATH5.551e-1338.18Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP_PINTA4.699e-1235.59Non-specific lipid-transfer protein OS=Pinus taeda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13C06-E11-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069856 ID=CX069856; Name=CX069856; organism=Citrus sinensis; type=EST; length=628bp
CCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGTTTGC
TTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGTGGCAC
GGTGGTGAATGACTTGACTCCATGCGTATCCTACGTGTCATACGGCGGGG
CCGTGCCGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGCCGCT
AGGTCCACAGCTGACCGTCAGACCGTGTGTAAGTGCTTGAAACAAGCTGT
TAGCGGAATCACGTACACCAGGTACCAGTTCGGATTCGCAGCTGGACTTC
CCGCCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTACCGAC
TGCAGCAGTGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTATGAGG
CTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCTGCGC
TTCTCTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCATCTG
GTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCATAAG
TACTAAAGAATAAGATTTTGTAAGTTACGTTTATGGAGTGACATTTTGTT
ATTATGTGTTNNAAAAAAAAAAAAAAAA
back to top