DR404072

Overview
NameDR404072
Unique NameDR404072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR404072 vs. ExPASy Swiss-Prot
Match: HUTH_NATTJ (Histidine ammonia-lyase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=hutH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 43/136 (31.62%), Postives = 67/136 (49.26%), Query Frame = 3 
Query:  336 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHR--RTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNI 737
            +++L GE L   ++  +      VELS  A+E + AS   + +   K +  YGVTTGFG  S     ++N   LQ+ LI   +AG+                R  ML R N+L +G+SGIR E ++ +  +LN  +
Sbjct:    1 MIHLTGENLKFKEIEKVINHGEQVELSTQAKENIIASRRLIDDLTEKESIVYGVTTGFGKFSDTFISSENLQQLQENLILSHSAGV-------GEPFSEQVVRGMMLFRANSLAKGHSGIRLETVQLLIDMLNKGV 129
The following BLAST results are available for this feature:
BLAST of DR404072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
HUTH_NATTJ9.182e-1131.62Histidine ammonia-lyase OS=Natranaerobius thermoph... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245D05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404072 ID=DR404072; Name=DR404072; organism=Citrus sinensis; type=EST; length=739bp
CGGCCGGGGGAGGGAAATCCATTATAGTTATAGACTNNNGAATNNNNTTT
AGCTCATTCATTCTTCATCACTCCCATTCATTCATTCTTCTTCTTCTTCT
TCTTTCTACAGTTTTGGTATTTTTTGTAATTGCAGTAACATTTACGTAAA
ACGATATGGAGAGAGGTGCCACTACTGAGAATGGTCACCAGAACGGTGGC
CTGGAGGGTTTGTGCAAGAATGACAATTACAATTACAGTTCTGGGGATGC
GTTGAACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCATTTGGAGG
AAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAACCTCGGT
GGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGTCCTCTAC
GAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCCAGCAGTA
ATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGGCGTTACC
ACTGGCTTTGGCGCCACTTCTCATCGGAGAACCAAGAACGGCGGTGCTCT
TCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGAAACGGAA
CAGAGTCATCTCACACGCTACCTCACTCAACAACAAGGGCAGCCATGCTT
GTGAGGGTTAACACTCTTCTCCAGGGCTACTCTGGCATCCGATTTGAAAT
CCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCAC
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