CX069843

Overview
NameCX069843
Unique NameCX069843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_NICTO (Putative membrane protein ycf1 OS=Nicotiana tomentosiformis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.595e-61
Identity = 119/216 (55.09%), Postives = 155/216 (71.76%), Query Frame = 1
Query:  115 SQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            SQAYVFYKL Q  ++N   LR VLQY+ TS FLK ++KD+F   GIF+ +L+HK L ++  N  K+ L  HYQYDLS+I+W+RL+PQ+ RNR NQ CMAQN++L K +SYEK+ L HY+K++  E   L NQK NFKK YRYDLL+YKS+NYE+K DS+I R   QVN   E  SN N  K  L  MLG++ INNY+ + +I+ +E+ L RKYFDW
Sbjct: 1225 SQAYVFYKLSQTQVINLSKLRSVLQYNRTSFFLKTKLKDYFRTLGIFHSELKHKKLQSYRINQWKNWLRRHYQYDLSQIRWSRLMPQKRRNRVNQSCMAQNRNLNKWNSYEKDQLIHYKKENDSELYSLSNQKDNFKKCYRYDLLAYKSINYENKNDSFICRLPFQVNKNLEISSNSNTSKHNLFYMLGNLHINNYLRKGNILYIERNLDRKYFDW 1440          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_EUCGG (Putative membrane protein ycf1 OS=Eucalyptus globulus subsp. globulus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.950e-59
Identity = 133/258 (51.55%), Postives = 164/258 (63.57%), Query Frame = 1
Query:    1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNG--LTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNR--KKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E+I KTNKN I                     L SFSQ  AYVFY+L Q    N Y LR VLQYHGTS FLKNEIKD+FE  GIF  +L+HK + N      K+ L GHYQYDLS I+W RLVP +WRNR NQ  + QNKDL KR S EK+   L +Y+K + FE + L N K N +K+Y YDL SYKS+NYE+KKDS+I  S +++NNK+E   NYN+  KK KL+ M G I   N + +DDI+++ KF  RKY DW
Sbjct: 1170 EKIAKTNKNTIRFIWTKKKSISDISKKNSKILLSSFSQ--AYVFYQLYQTQFCNLYKLRYVLQYHGTSFFLKNEIKDYFETQGIFYPELKHKNILNSEMIQWKNWLRGHYQYDLSPIRWYRLVPHKWRNRFNQTRLVQNKDLNKRHSDEKDRLILINYKKLNDFELNSLSNSKYNLQKYYGYDLFSYKSINYENKKDSHIYVSPLRLNNKQEISYNYNKIYKKGKLINMPGGIIPIN-LEDDDILNLXKFTDRKYLDW 1424          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_ATRBE (Putative membrane protein ycf1 OS=Atropa belladonna GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.344e-59
Identity = 123/256 (48.05%), Postives = 163/256 (63.67%), Query Frame = 1
Query:    1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNK--DLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E+IN   K   IST++               +L   SQ  AYVFYKL Q  ++N    R VLQY+ TS FLK +IKD+F   GIF+ +L+HK L ++  N  K+ L  HYQYDLS+I+W+RL+PQ+WRNR NQ CMAQNK  +L K +SYE + L HY+K++  E   L NQ+ NF+K YRYDLLSYKS+NY++K DS+I R   QVN   E   N N  K     M G++ INNY+ + +I+ +E+ L RKYFDW
Sbjct: 1171 EKINNKKKIHFISTLKKSLYNISNKNSHIFFDLSYLSQ--AYVFYKLSQTQVINLSKFRSVLQYNRTSFFLKTKIKDYFRTLGIFHSELKHKKLQSYRINQWKNWLRRHYQYDLSQIRWSRLMPQKWRNRVNQSCMAQNKNINLNKWNSYENDQLIHYKKENDSELYSLSNQEDNFQKCYRYDLLSYKSINYKNKSDSFISRLPFQVNKNLEISYNSNTSKHNFFDMPGNLYINNYLRKGNILYIERNLDRKYFDW 1424          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_SOLBU (Putative membrane protein ycf1 OS=Solanum bulbocastanum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 124/255 (48.63%), Postives = 164/255 (64.31%), Query Frame = 1
Query:   16 TNKNRI----ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNK--DLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            TNK +I    ISTI+              C+L   SQ  AYVFYKL Q  ++N    R VLQY+ TS FLK +IKD+F+K GIF+ +L+HK L ++  N  K+ L  HYQYDLS+I+W+RL+P++WR R NQ CMAQNK  +L K +SYEK+ L HY+K++  E   L NQK NFKK YRY LL+YKS+NYE+K DS+  R   QV    E   N N  K   + M  ++ INNY+ + +I+D+E+ L RKYFDW
Sbjct: 1185 TNKKKIHFIFISTIKKSLYNISKKNSHIFCDLSYLSQ--AYVFYKLSQTQVINLSKFRSVLQYNTTSCFLKTKIKDYFKKLGIFHSELKHKKLQSYRINQWKNWLRWHYQYDLSQIRWSRLMPKKWRTRVNQSCMAQNKNRNLNKWNSYEKDQLIHYKKENDSELYSLSNQKDNFKKCYRYGLLAYKSINYENKSDSFFSRLPFQVKKNLEISYNSNTSKHNFVDMPVNLHINNYLRKVNILDIERNLDRKYFDW 1437          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_PANGI (Putative membrane protein ycf1 OS=Panax ginseng GN=ycf1 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.156e-58
Identity = 129/259 (49.81%), Postives = 161/259 (62.16%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLL--RNQKSNFKKHYRYDLLSYKSLNYEDKKDSY-IDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E INKTN+N I  ISTI+                    S SQAYVFYKL +  ++N Y LR VL+YHGTS FLK  IKD F   GIF+ +L H    ++G N  K+ L GHYQY+LS+I+W+ L+PQ+WRN  NQ  + Q K+L K DS  K+ L HY+KQ+ FE   L   N+  N +K+YRYDLLSYKS+NYE K D Y I  S +QVNN +    NY  +K K   +L  I INNY+G+ DIM MEK   RKYFDW
Sbjct: 1205 ETINKTNQNTIHFISTIKKSLYNIRNSKKNSHLFFDLSSLSQAYVFYKLSRTRVINLYKLRSVLEYHGTSFFLKTAIKDSFGTQGIFHSELEHTKFPSYGTNQWKNWLRGHYQYNLSQIRWSGLIPQKWRNTINQGRITQKKNLTKWDS--KDRLLHYKKQNAFEVYSLPNPNKNENSQKYYRYDLLSYKSINYERKTDPYIIYGSPLQVNNNQRISYNYTTQKQKFFDILEDIPINNYLGKGDIMYMEKNPDRKYFDW 1461          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_SOLTU (Putative membrane protein ycf1 OS=Solanum tuberosum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.803e-58
Identity = 122/255 (47.84%), Postives = 164/255 (64.31%), Query Frame = 1
Query:   16 TNKNRI----ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNK--DLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            TNK +I    ISTI+              C+L   SQ  AYVFYKL Q  ++N    R VLQY+ TS FLK +IKD+F+  GIF+ +L+HK L ++  N  K+ L  HYQYDLS+I+W+RL+P++WR + NQ CMA+NK  +L K +SYEK+ L HY+K++  E   L NQK NFKK YRY LL+YKS+NYE+K DS+  R   QV    E   N N  K   + M G++ INNY+ + +I+D+E+ L RKYFDW
Sbjct: 1185 TNKKKIHFIFISTIKKSLYNISKKNSHIFCDLSYLSQ--AYVFYKLSQTQVINLSKFRSVLQYNTTSCFLKTKIKDYFKTLGIFHSELKHKKLQSYRINQWKNWLRWHYQYDLSQIRWSRLMPKKWRTKVNQSCMAKNKNRNLNKWNSYEKDQLIHYKKENDSELYSLSNQKDNFKKCYRYGLLAYKSINYENKSDSFFSRLPFQVKKNLEISYNSNTSKHNFVDMPGNLHINNYLRKVNILDIERNLDRKYFDW 1437          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_HELAN (Putative membrane protein ycf1 OS=Helianthus annuus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.803e-58
Identity = 128/259 (49.42%), Postives = 166/259 (64.09%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNL---LSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E+INKT +N+I  IST                 N+   LS+  SQ YVF KL Q  +++F  LR +LQY+G S FLKNEIKDFF + GIF+Y++RHK L N G N  K+ L GHYQYDLS+I W+RLVPQ+WRN  NQ   +QNKDL K  SYEK+ L  Y+K+   +  LL N++ NF+K+YRYD LSYK ++ E  K SYI RS ++ N K+E   N  R K K + +L +I I NY+G+ DI+ MEK   RKY  W
Sbjct: 1054 EKINKTKQNQIDFISTRTIKKAFDNLRNSKRKSNIFFELSYL-SQKYVFLKLSQTQVIHFNKLRSILQYNGPSFFLKNEIKDFFGRQGIFDYEVRHKKLPNSGMNPWKNWLRGHYQYDLSQITWSRLVPQKWRNGKNQCQPSQNKDLNKWYSYEKDQLFDYKKKQNLKVYLLSNKEENFQKNYRYDRLSYKYIHSETNKKSYIYRSSLEPNKKQE---NSTRNKEKTVNILKNIPIKNYLGKSDIIYMEKNTDRKYLGW 1308          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LIRTU (Putative membrane protein ycf1 OS=Liriodendron tulipifera GN=ycf1 PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.273e-58
Identity = 127/258 (49.22%), Postives = 164/258 (63.57%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQ--VNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E I++TN+N I  ISTI+              C+L S SQ  AYVFY LLQ+ ++N Y LR VLQY G  LFLK+ IKD F   GI + + R K   N G N  K+ L GHYQY+LS+ +W+RLVPQ+WRNR NQ    QNKD  K+DSYEK+   HYEKQ+ +  + L N+K  FKKHYRYDLLS+K ++YED+KDSYI  S +Q  VN   E   NYN  K +   +   I+I++Y+GE+ I+D  K   RKY +W
Sbjct: 1135 EGIDETNQNAIHFISTIKKSLSNISNNKSQIYCDLSSLSQ--AYVFYNLLQIQVINKYYLRFVLQYRGAYLFLKDRIKDHFGTRGILDAKSRPKKPPNSGMNEWKNWLRGHYQYNLSQTRWSRLVPQKWRNRVNQRRTIQNKD-SKKDSYEKDQFIHYEKQNNYVVNSLPNKKEKFKKHYRYDLLSHKYIHYEDRKDSYIYGSPLQVNVNGDREIPYNYNTPKPESFYVPRGIAISDYLGEESIIDTGKNPDRKYLEW 1389          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_NANDO (Putative membrane protein ycf1 OS=Nandina domestica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.384e-57
Identity = 132/263 (50.19%), Postives = 161/263 (61.22%), Query Frame = 1
Query:    7 INKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSG--HYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFK--KHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKV-----KLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            I++TN N I  ISTI+                    S SQAYVFYKL Q  + N Y+LR VLQY GT LFLK+ IKD F   GIF+ +  HK L NF  N  K+ L G  HYQYD S+ +W+RLVPQ+WRNR +Q CM Q K+    D YEK+ L HYEKQ+ +  +L  NQK  FK  K+ +YD LS+K ++YEDKKDSYI RS +QVN  +E+  NYN         KL  M G IS+NNY+ ED   D EK L RKYFDW
Sbjct: 1127 IDETNPNTIHFISTIKKSLSNINNSNNNSQIFCDLDSLSQAYVFYKLSQTQVFNKYHLRSVLQYRGTLLFLKDRIKDSFGTQGIFHSESGHKKLRNFRMNEWKNWLRGRYHYQYDFSQTRWSRLVPQKWRNRIHQRCMVQTKNSTYSDLYEKDQLIHYEKQNNYAVEL--NQKDKFKNYKYDKYDRLSHKYIHYEDKKDSYIYRSPLQVNEAKEFLYNYNTYNYSTYNPKLFFMSGDISLNNYLREDS--DTEKNLDRKYFDW 1385          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_SOLLC (Putative membrane protein ycf1 OS=Solanum lycopersicum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.113e-57
Identity = 124/260 (47.69%), Postives = 164/260 (63.08%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNK--DLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDR--SLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E+IN   K     ISTI+              C+L   SQ  AYVFYKL Q  ++NF   R VLQY+ TS FLK +IKD+F+  GIF+ +L+HK L ++  N  K+ L  HYQYDLS+I+W+RL+P++WR R NQ CMAQNK  +L K +SYEK+ L HY+K++  E   L N+K NFKK Y Y LL+YKS+NYE+K DS+  R    VQV    E   N N  K   + M G++ INNY+ + +I+D E+ L RKYFDW
Sbjct: 1184 EKINNQKKIHFMFISTIKKSLYNISKKNSHILCDLSYLSQ--AYVFYKLSQTQVINFSKFRSVLQYNTTSCFLKTKIKDYFKTLGIFHSELKHKKLQSYRINQWKNWLRWHYQYDLSQIRWSRLMPKKWRTRVNQSCMAQNKNRNLNKWNSYEKDQLLHYKKENDSELYSLSNEKDNFKKCYGYGLLAYKSINYENKSDSFFSRLPFEVQVKKNLEISYNSNTSKHNFVDMPGNLHINNYLRKGNILDRERNLDRKYFDW 1441          
The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
YCF1_NICTO1.595e-6155.09Putative membrane protein ycf1 OS=Nicotiana toment... [more]
YCF1_EUCGG1.950e-5951.55Putative membrane protein ycf1 OS=Eucalyptus globu... [more]
YCF1_ATRBE4.344e-5948.05Putative membrane protein ycf1 OS=Atropa belladonn... [more]
YCF1_SOLBU1.651e-5848.63Putative membrane protein ycf1 OS=Solanum bulbocas... [more]
YCF1_PANGI2.156e-5849.81Putative membrane protein ycf1 OS=Panax ginseng GN... [more]
YCF1_SOLTU4.803e-5847.84Putative membrane protein ycf1 OS=Solanum tuberosu... [more]
YCF1_HELAN4.803e-5849.42Putative membrane protein ycf1 OS=Helianthus annuu... [more]
YCF1_LIRTU6.273e-5849.22Putative membrane protein ycf1 OS=Liriodendron tul... [more]
YCF1_NANDO2.384e-5750.19Putative membrane protein ycf1 OS=Nandina domestic... [more]
YCF1_SOLLC3.113e-5747.69Putative membrane protein ycf1 OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B11-C21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bp
GAAAGAATTAATAAAACAAATAAAAATAGAATTATTTCGACTATCCAAAA
ATTGATTTCTAAGACTAGTAATAAGAATTCAAAGATTTCTTGTAATTTAT
TGTCTTTTTCACAATCACAAGCATATGTATTTTACAAATTATTACAAGTC
CCAATTTTGAACTTTTATAATTTAAGACCCGTTCTTCAATATCACGGAAC
ATCTCTATTTCTTAAGAATGAAATAAAAGATTTTTTTGAAAAACACGGAA
TCTTTAATTACCAATTAAGACATAAACCCCTTTGGAATTTTGGAAGGAAT
ACACGAAAACACTGTTTAAGCGGGCATTATCAATATGATTTATCTCGGAT
TAAATGGGCTAGATTAGTACCACAAGAATGGCGAAATAGAGCCAATCAAC
ACTGTATGGCTCAAAATAAAGATTTAATTAAAAGAGATTCGTATGAAAAA
AATGGATTAACTCATTACGAAAAACAACATTTTTTTGAAGCAGACCTATT
ACGTAATCAAAAATCGAATTTTAAAAAACACTATAGATATGATCTTTTAT
CATATAAATCGCTTAATTATGAAGATAAGAAAGACTCGTATATTGATAGA
TCACTAGTCCAAGTAAATAATAAAGAAGAGTATTATTCTAATTACAATAG
AAAGAAAGTAAAATTGTTGGCTATGCTGGGAAGTATCTCTATCAATAATT
ATATAGGGGAAGATGATATTATGGATATGGAAAAATTCTTGTATAGAAAA
TATTTTGATTGGA
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