CX069843

Overview
NameCX069843
Unique NameCX069843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2915 contig Csv1_Contig2915:72..834. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LEMMI (Putative membrane protein ycf1 OS=Lemna minor GN=ycf1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.635e-56
Identity = 123/259 (47.49%), Postives = 162/259 (62.55%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVK----LLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            E I++TN+N I  IST+Q              C+L S SQ  AYVFY L QV + N Y LR V QYHGT LFLK+ IKD+    G+F+Y+ +HK +   G N  K+ L  HYQY+LS+ +W+RLVPQ+WRNR NQ C  Q KD I  DSY+KN L HY KQ+ +  D    QK   KK+Y+YDLL++K +NYED  DSYI  S +QVN   +   N+N +K +      A++G I I++Y+GE+  +  EK L RKYFD
Sbjct: 1196 EGIDQTNQNTIHFISTMQKSLSNISNKNSNISCDLSSLSQ--AYVFYTLSQVQVNNKYYLRSVFQYHGTHLFLKDRIKDYCGTRGLFDYKPKHKKVDKSGINEWKNWLKSHYQYNLSQTQWSRLVPQKWRNRVNQRCTIQKKDSIILDSYKKNQLIHYVKQNDYGIDSWTGQKEKLKKNYKYDLLAHKYMNYEDGGDSYIYASPLQVNRDPKIPYNFNTQKTQKPESFYALVG-IDISDYLGEESSLYGEKNLDRKYFD 1451          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_SOYBN (Putative membrane protein ycf1 OS=Glycine max GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.970e-55
Identity = 129/261 (49.43%), Postives = 161/261 (61.69%), Query Frame = 1
Query:    1 ERINKTNKNRI-ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNF--YNLRPVLQYHGTSLFLKNEIKD-FFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHY-QYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYI--DRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            ERI KTN++ I   +I               C++ SF  SQAYVF+ LL   I+N   Y LR V QYHG   FLKNEIKD FF   GIF+Y+L+H    N  RN   + L  HY QYDLS+ +W+RLVPQ+WRNR  ++ +AQNKDL K +SYEK+ L  Y++Q       +   K   +K YRYDLLSY  +NY DKKDSYI   RSL QV   +   SNYN  K +L  ++ ++ I NYI ED I+DMEK LYRKYFDW
Sbjct: 1150 ERIYKTNQSIIRFISILHKYFHTRNPNSHNSCDI-SFL-SQAYVFFNLLHTRIININIYKLRSVFQYHGIFFFLKNEIKDSFFGAQGIFHYKLKHNNPLNSVRNQWTNWLKDHYYQYDLSKSRWSRLVPQKWRNRITEYRIAQNKDLTKCNSYEKSQLILYKEQQ------VNALKKKIRKQYRYDLLSYNFINYADKKDSYIYGYRSLFQVKKNQVISSNYNTYKKELFDIIDNLFIKNYISEDAILDMEKNLYRKYFDW 1402          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CHLSC (Putative membrane protein ycf1 OS=Chloranthus spicatus GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.107e-54
Identity = 124/260 (47.69%), Postives = 160/260 (61.54%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSY--EKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDM--EKFLYRKYFDW 762
            E I++TN N I  ISTI+                    S SQAYVFYKL ++ ++N Y L   LQYH T LFLK+ IKD+    GIF+ + RHK   N G N  K+ L GHYQY LS+ KW+RLVP++WRNR NQ  M  NKD  K +SY  EK+ L HY+K++    D L +QK  FKKH RYDLLS+K + YED KDS I  SL+QVN  +E   NY   K K   + G I+I++Y+GE+ I+D+  ++   RKYFDW
Sbjct: 1176 EGIDETNLNIIHFISTIKKSLSNTNISNKNLQIYCDLSSLSQAYVFYKLSKIKVINLYRLGSALQYHETYLFLKDRIKDYCGTQGIFDSESRHKKPQNSGMNEWKNWLRGHYQYKLSQTKWSRLVPRKWRNRVNQRRMIPNKDSKKWNSYEKEKDQLIHYDKKNDSAVDSLPSQKEKFKKHSRYDLLSHKYIIYEDGKDSSIYGSLLQVNRNQEIPYNYKTHKPKPFYVPGGIAISDYLGEEYIIDIDTDQNPDRKYFDW 1435          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_COFAR (Putative membrane protein ycf1 OS=Coffea arabica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.599e-53
Identity = 126/258 (48.84%), Postives = 155/258 (60.08%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRS--LVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            ERINK N+N I  ISTI+                 LS+  SQAYVFYKL Q  + N Y LR    Y GTS FLK EIK  FEK GI   +L  K L ++G +  K  L GHYQYDL  I+W++L+ ++WRNR NQH MAQN++  K +SYEK    HY+KQ   E   L NQK NF+K+ RYDLLSYK +NY+  +D  I  S   VQVN  +++Y N N  K  L  ML SI IN Y+ + +I  MEK   RKYFDW
Sbjct: 1183 ERINKKNQNTIYFISTIKKSIDTINNKTNSYIFCDLSYL-SQAYVFYKLSQTKVSNLYKLRSFFHYLGTSFFLKTEIKHSFEKQGIIQNELSLKKLPSYGMDQWKGWLKGHYQYDLPSIRWSKLISEKWRNRVNQHHMAQNQN-FKLNSYEKG---HYKKQKDSEVYSLLNQKENFQKNSRYDLLSYKYINYQKMRDPSIYESPFQVQVNKNQDFYYNSNTYKHNLFDMLESIPINPYLVKGNIRYMEKNTDRKYFDW 1435          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CERDE (Putative membrane protein ycf1 OS=Ceratophyllum demersum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.599e-53
Identity = 113/253 (44.66%), Postives = 153/253 (60.47%), Query Frame = 1
Query:    7 INKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            I++TNKN +  IST++              C+L   SQ  AYVFYKL Q  ++N Y+LR V QY G   FLK+ IKD+ +  GIF+ + R  P  N   N  K+ L GHYQY+LS+ +W+RLVPQ+W+NR NQ    Q KD  K  SYE++ L HY+ +  +    L  QK   KKHYRYDLLS+K LN+ED+ +SYI  S +QVN   E   NY   K K    LG ++I++Y+ E+ ++D +K   RKYFD
Sbjct: 1175 IDETNKNAVHFISTLKKALFNISDKNSSISCDLSYLSQ--AYVFYKLSQTQVINKYDLRYVFQYQGAHSFLKDRIKDYLQTRGIFHSESRQNPFRNSEINDWKNWLRGHYQYNLSQTRWSRLVPQQWKNRVNQRHRIQKKDSQKWHSYEQDQLIHYKTKKNYAVHSLPMQKEKLKKHYRYDLLSHKYLNFEDRNNSYIYGSPLQVNGDREITYNYKTHKSKSFCTLGGLTISDYLKEEYLIDTDKNSDRKYFD 1425          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_DAUCA (Putative membrane protein ycf1 OS=Daucus carota GN=ycf1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.088e-53
Identity = 109/219 (49.77%), Postives = 145/219 (66.21%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYI-DRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL Q PI++FY LR + +Y+GT  FLK  +K++F   GIF+ +LRH  L ++  N  K  L GHYQY+LS+I+W+ L+P++WR   N+  M  NKDL K +SYEK+ L +++KQ  F+   L NQK NF K+Y YDL SYKS+N E KK SYI   S  ++ N ++   NYN+KK  L   L  I IN+Y+   DIM M+K   RKYFDW
Sbjct: 1177 SLSQAYVFYKLSQTPIIHFYKLRDIFEYNGTPFFLKTAMKNYFLTQGIFHSELRHTKLSSYETNQWKSWLRGHYQYNLSQIRWSGLIPKKWRTTINEGGMTPNKDLTKCNSYEKDRLLYHKKQKDFKVYPLPNQKDNFLKYYIYDLFSYKSINSEIKKSSYIFFGSPSELKNNQKIAFNYNKKKQNLSENLEEIPINHYLETGDIMYMKKNPDRKYFDW 1395          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LACSA (Putative membrane protein ycf1 OS=Lactuca sativa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.717e-52
Identity = 119/255 (46.67%), Postives = 156/255 (61.18%), Query Frame = 1
Query:    1 ERINKTNKNRI----ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKY 753
            ERINKT +N+I      TI+                      SQ YVF+KL Q  I+NF  LR +LQY+G S  LK EIKDFF + GIF+ +LRH  L N+G N  K+ L GHYQYDLS+I  +RL+PQ+WRNR NQ   +QNKDL K  S EK+ L   +K+   +  LL N++ N KK+YRYDLLSYK ++ E KK+ YI RS ++ NN +E   N  R K K  ++L +I   NY+G+ DI+ MEK   RK+
Sbjct: 1048 ERINKTKQNKIDFILSMTIKRAFDNLRNSKRKSDIFFDLSYLSQKYVFFKLSQTQIINFNKLRSILQYNGPSFCLKTEIKDFFGRQGIFHSELRHNKLPNYGMNPWKNWLRGHYQYDLSQITSSRLIPQKWRNRINQCQTSQNKDLNKWYSSEKDQLLDSKKKQNSKVYLLPNKEDNLKKNYRYDLLSYKYIHSETKKNYYIYRSSLETNNNQE---NSTRNKEKFFSILKNIPSKNYLGKSDIIYMEKNKDRKF 1299          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_DRIGR (Putative membrane protein ycf1 OS=Drimys granadensis GN=ycf1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.687e-51
Identity = 125/261 (47.89%), Postives = 160/261 (61.30%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXX--CNLLSFSQSQAYVFYKLLQ-VPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEK--NGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E I++TN+N+I  ISTIQ                C+L SF  SQAYVFYKL Q   ++N Y+L  VLQYHG S F+K+ IKD     GIF+ + RHK L N   N  K+ L  HYQY+LS+ +W+RLV ++WR R NQ    QNKD    DSYEK  +   HYEK++    + L +QK  FKKHYRYDLLSYK +NYED+K SYI  S +Q+N   E   N N  K +   +LG I+I++Y+GE+ IMD  K    KYF W
Sbjct: 1141 EGIDETNQNKIQFISTIQKSLSILNIRNNNSHIYCDL-SFL-SQAYVFYKLSQNQEVINKYHLISVLQYHGASPFIKHRIKDC--TRGIFDSKSRHKKLPNSRMNEWKNWLKRHYQYNLSQNRWSRLVSKKWRTRVNQRRTIQNKDSKNLDSYEKEKDQFIHYEKENDCAVNSLPSQKEKFKKHYRYDLLSYKYINYEDRKSSYIYVSPLQINGGREIPYNDNTPKPESCYVLGDIAISDYLGEESIMDTGKNPDIKYFKW 1397          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_IPOPU (Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.267e-50
Identity = 119/259 (45.95%), Postives = 157/259 (60.62%), Query Frame = 1
Query:    7 INKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLV--PQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDD---IMDMEKFLYRKYFDW 762
            INK  KN I  IS I+              C+L + SQ  AYVFYK+ Q  ++N   LR VLQ+HGTS FLK ++KD F   GIF  ++ HK L     +  K+ L G+YQYDLS+I W+ L+   Q+WRNR N++C +Q KDL K +S  K  L+HY+K+     + L NQK NF+K YRYDLLSYKS+N E+K DS   RS+ QV  ++    NYN  +  L A+ GSI IN +IG  +   I  +EK L RKYF+W
Sbjct: 1270 INKKTKNTIHFISNIKTYTYNSCKKNSEIFCDLSNLSQ--AYVFYKISQTGVVNLSKLRSVLQHHGTSFFLKTQMKDSFRTQGIFQSEVIHKKLQRSITSQWKNWLRGNYQYDLSQIIWSSLMSQKQKWRNRVNRYCRSQKKDLKKWNSCGKYQLSHYKKKK--GPNSLSNQKDNFQKCYRYDLLSYKSINNENKGDSVFYRSIPQVTKRQAVSDNYNMSQNSLFAITGSIPINIFIGRIERVYIPYIEKNLNRKYFNW 1524          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_MORIN (Putative membrane protein ycf1 OS=Morus indica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.686e-50
Identity = 124/262 (47.33%), Postives = 156/262 (59.54%), Query Frame = 1
Query:    1 ERINKTNKN--RIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNL-----RPVLQYHGTSLFLKNEIKDFF-EKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E+I+KTN+   + ISTI+              CNL   SQ  AYVFYKL Q    NF+NL     R V QY+G  LFLKNEIKD+F     IF+ +LRHK + N+  N  K+CL G+YQ +LS+   +RLVPQ+  N  NQH +AQN  L K DSYEKN              L+ ++K N KK YRYDLLSY  +NYEDKK+S I    +QVNN +E + NY   K KL  ML  I INNY+ ED+I+D++    RK FDW
Sbjct: 1169 EKIDKTNQKITQFISTIKESLSNINNKNLETFCNLSYLSQ--AYVFYKLSQSRGFNFFNLYKLRLRSVFQYNGAFLFLKNEIKDYFLGTQKIFHSELRHKNIPNYEINQWKNCLRGYYQNNLSQ---SRLVPQKGINIVNQHSIAQNNHLNKYDSYEKN-------------PLINSEKKNVKKKYRYDLLSYNFINYEDKKNSSIYGLPLQVNNNQEIFYNYTEHKRKLFNMLVGIPINNYLVEDNIIDIKNNPDRKNFDW 1412          
The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
YCF1_LEMMI2.635e-5647.49Putative membrane protein ycf1 OS=Lemna minor GN=y... [more]
YCF1_SOYBN4.970e-5549.43Putative membrane protein ycf1 OS=Glycine max GN=y... [more]
YCF1_CHLSC1.107e-5447.69Putative membrane protein ycf1 OS=Chloranthus spic... [more]
YCF1_COFAR1.599e-5348.84Putative membrane protein ycf1 OS=Coffea arabica G... [more]
YCF1_CERDE1.599e-5344.66Putative membrane protein ycf1 OS=Ceratophyllum de... [more]
YCF1_DAUCA2.088e-5349.77Putative membrane protein ycf1 OS=Daucus carota GN... [more]
YCF1_LACSA6.717e-5246.67Putative membrane protein ycf1 OS=Lactuca sativa G... [more]
YCF1_DRIGR5.687e-5147.89Putative membrane protein ycf1 OS=Drimys granadens... [more]
YCF1_IPOPU1.267e-5045.95Putative membrane protein ycf1 OS=Ipomoea purpurea... [more]
YCF1_MORIN3.686e-5047.33Putative membrane protein ycf1 OS=Morus indica GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B11-C21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bp
GAAAGAATTAATAAAACAAATAAAAATAGAATTATTTCGACTATCCAAAA
ATTGATTTCTAAGACTAGTAATAAGAATTCAAAGATTTCTTGTAATTTAT
TGTCTTTTTCACAATCACAAGCATATGTATTTTACAAATTATTACAAGTC
CCAATTTTGAACTTTTATAATTTAAGACCCGTTCTTCAATATCACGGAAC
ATCTCTATTTCTTAAGAATGAAATAAAAGATTTTTTTGAAAAACACGGAA
TCTTTAATTACCAATTAAGACATAAACCCCTTTGGAATTTTGGAAGGAAT
ACACGAAAACACTGTTTAAGCGGGCATTATCAATATGATTTATCTCGGAT
TAAATGGGCTAGATTAGTACCACAAGAATGGCGAAATAGAGCCAATCAAC
ACTGTATGGCTCAAAATAAAGATTTAATTAAAAGAGATTCGTATGAAAAA
AATGGATTAACTCATTACGAAAAACAACATTTTTTTGAAGCAGACCTATT
ACGTAATCAAAAATCGAATTTTAAAAAACACTATAGATATGATCTTTTAT
CATATAAATCGCTTAATTATGAAGATAAGAAAGACTCGTATATTGATAGA
TCACTAGTCCAAGTAAATAATAAAGAAGAGTATTATTCTAATTACAATAG
AAAGAAAGTAAAATTGTTGGCTATGCTGGGAAGTATCTCTATCAATAATT
ATATAGGGGAAGATGATATTATGGATATGGAAAAATTCTTGTATAGAAAA
TATTTTGATTGGA
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