CX069843

Overview
NameCX069843
Unique NameCX069843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2915 contig Csv1_Contig2915:72..834. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUCSA (Putative membrane protein ycf1 OS=Cucumis sativus GN=ycf1-A PE=3 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.072e-49
Identity = 123/272 (45.22%), Postives = 155/272 (56.99%), Query Frame = 1
Query:    1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQ----SQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEK----HGIFNYQLRHKPLWNFGR----NTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISI------NNYIGEDDIMDMEKFLYRKYFDW 762
            ERI+K N++ IISTI+               NL  F      SQAY+FYKL Q  I+N   LRPV QYHGTS FLKNEI+D+F +    H I +  L+ K   N       N  K+ L GHY +DL  I+W++L+ Q+WRNR  Q    +NKD  + DSYEK GL  Y+KQ+ FE       K   KK Y YD LSYKS+NYED KDSYI    VQV N +E    YN+ K K   +L  + I      NNY+ + +I D+EK + RKYFDW
Sbjct: 1168 ERIDKPNQSIIISTIKKLLSNITNKNVKNQ-NLKMFWDVSYLSQAYLFYKLSQTKIINLSKLRPVFQYHGTSRFLKNEIQDYFVEVVGAHEILHSDLKQKKQKNLENSGMINPWKNWLRGHYNFDLYPIRWSKLLSQKWRNRVKQD--RKNKDFNQCDSYEKKGLIDYKKQNPFETHYSLPTKK--KKKYIYDSLSYKSINYEDNKDSYIYELPVQVKNNQESCYKYNKDKCKFFDILTDLPIDKYLVKNNYLVKANIRDLEKTMDRKYFDW 1434          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_SPIOL (Putative membrane protein ycf1 OS=Spinacia oleracea GN=ycf1-A PE=3 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.829e-49
Identity = 127/265 (47.92%), Postives = 159/265 (60.00%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFS-QSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHC--LSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSY-IDRSL-VQVNNKEE--YYSNYNRKKVKLLAMLGSISINN--YIGEDDIMDMEKFLYRKYFDW 762
            E I KTNKNRI  ISTI                 +  FS  SQAYVFYKL Q  ILN Y LR VLQY G SLFLKNEIKDFF   GI N +L+ K L N G N  K+   L  +YQY+LS++KW+RLVPQ+WRNR  +HC  +N +L     Y+   L +  K+H     LL +QK NF+K+YRYD+LSYK  NY++K DSY     L  QVN  +E  Y  NYN    K + M  +I I+N  Y+ +  IMD++K + RKY D+
Sbjct: 1148 ESITKTNKNRIQFISTINKKFLPFLSTSKNNSKIISDFSFLSQAYVFYKLSQAKILNLYKLRLVLQYRGISLFLKNEIKDFFGTQGITNSELKTKKLPNSGMNQWKNWLKLKNNYQYNLSQLKWSRLVPQKWRNRVTEHCEVENTNL-----YQNEELIN-SKKHLL---LLPDQKYNFQKNYRYDVLSYKFFNYKNKNDSYRYSYGLPFQVNKNQEFSYTYNYNINNNKFIDMWWNIPISNFSYLEKTKIMDIDKNIDRKYLDF 1403          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_ILLOL (Putative membrane protein ycf1 OS=Illicium oligandrum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.829e-49
Identity = 114/269 (42.38%), Postives = 158/269 (58.74%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXX-------CNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKR------DSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E I++TN+N I  ISTI+                     C+L S SQ  AYVFY L Q  +LN Y L+ + Q+ G   F+K++IKD+F   GIF+ + R+K L N   N  K+ L GHYQY+LS  +W+RLVP++WRN  NQH   +    IK+      DSYEK+ L HYEK + +  D L + K   +KHY+YDLLS+K +NY  +KDSYI  S +Q+N   E   NYN  K +   + G I+I++Y+GE+ I+  +K   RKY DW
Sbjct: 1180 EGIDETNQNTIHFISTIKSLSNITNISHSNISNNNSQIYCDLSSLSQ--AYVFYILSQTQVLNKYYLKSLFQHDGEYPFIKDKIKDYFLTRGIFHSESRYKQLPNCRMNEWKNWLRGHYQYNLSHTRWSRLVPRKWRNGVNQHHRIKQHHRIKKKNSKKWDSYEKDQLIHYEKDNSYAVDSLPSPKKKMEKHYKYDLLSHKYINYGYRKDSYIYGSPLQINGDREIPYNYNTHKSEPFYVPGDIAISDYLGEEYIIGTDKNPDRKYLDW 1446          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CALFG (Putative membrane protein ycf1 OS=Calycanthus floridus var. glaucus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.186e-48
Identity = 112/258 (43.41%), Postives = 155/258 (60.08%), Query Frame = 1
Query:    1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYK----SLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E I++TN N++IS  +               +L S SQ  AY+FYKL Q  ++N Y L+ VLQY    LFL++ I+D+    GIF+ + +  P  N G    K+ L GHYQY+LS+ +W+RLV ++WR+R NQH   QNKD  KRDSYEK+   HYEKQ+    + L +QK  F+KHYRYDL SYK     +NY D KDSY  RS +QVN       NYN  K + + +LG I++++Y+ E  I+D  K   +KY +W
Sbjct: 1140 EGIDETNPNKLISISKKYFSNISNKKSRIYWDLSSLSQ--AYLFYKLSQTQVINKYRLKSVLQYR--DLFLRDRIRDYLGTRGIFDSKFKKLP--NSGMGEWKNWLRGHYQYNLSQTRWSRLVSKKWRDRVNQHRTIQNKDY-KRDSYEKDQFIHYEKQNDSVVNSLPSQKEKFQKHYRYDLFSYKYINYGVNYGDSKDSY--RSPLQVNEDRGIPYNYNTPKSESVFVLGGIALSDYLEEKYIIDRGKSRDKKYLEW 1388          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_DIOEL (Putative membrane protein ycf1 OS=Dioscorea elephantipes GN=ycf1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.217e-46
Identity = 106/223 (47.53%), Postives = 143/223 (64.13%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQN--KDLIKRDSY--EKNGLTHYEKQ-HFFEA-DLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            S SQAYVFY L Q  + N Y+LR VL Y  T  FL++ IK++    GIF+ + R+K +     N  K+ L  HYQY LS+ KW RLVPQ+W N+ N+H + QN  KD IK DSY  EK+ L HY KQ H ++A D L +QK   KKHYRYDLLS++ +NY +++DSYI  S +QVN  +E   N    K +   +L +I IN+Y+ E  I+DM++ + RKYFD
Sbjct: 1209 SLSQAYVFYILSQTQLFNKYHLRSVLHYDRTYPFLRDTIKNYCMTQGIFDTKSRYKKIHKSEINEWKNWLRDHYQYKLSQTKWFRLVPQKWGNKVNKHYIIQNKDKDSIKLDSYKKEKDQLIHYMKQNHNYDAVDSLTSQKEKLKKHYRYDLLSHEYMNYGNREDSYIYESTLQVNGNQEISYNLYTMKAESYYILITIVINDYLEEGYIVDMDQNMNRKYFD 1431          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1B_PIPCE (Putative membrane protein ycf1 C-terminal part OS=Piper cenocladum GN=ycf1 PE=5 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.603e-45
Identity = 113/266 (42.48%), Postives = 151/266 (56.77%), Query Frame = 1
Query:    7 INKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLS----FSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSY--EKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDS-YIDRSLVQVNNKEEY---YSNYNRKKVKLLAMLGS-ISINNY-IGEDDIMDMEKFLYRKYFDW 762
            I++ N+N I  ISTI                N L+    FS SQAYVF KL Q  + N Y L  +LQYHG S   K +IKD+    GIFN++L+ K L N G N  K+ L  HYQY+L +I+W+R+VPQ+WRNR N+    + K  I   SY  E +   +Y+KQ  F  + L NQK   KKHYRYDL SYK L+YE+ K+S  I RS  Q+   +E    Y+NYNR K +    +   I+IN+Y I  + + + +K   RKY DW
Sbjct:  827 IDEINQNTIEFISTINRSFSNITNIFNNSNKNSLTYFELFSLSQAYVFLKLSQTQVFNLYCLGSLLQYHGASTLFKKKIKDYLGSQGIFNFKLKQKKLQNSGINDWKNWLRSHYQYNLPKIRWSRIVPQKWRNRINERRTIKKKGSIFSHSYAKENDQFIYYKKQKNFRMNSLTNQKEKLKKHYRYDLSSYKYLHYEELKNSPLISRSPFQIKGGQEIPYNYNNYNRPKYESFFYVPEIIAINDYLIMGEYVFNTDKNRDRKYLDW 1092          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_NUPAD (Putative membrane protein ycf1 OS=Nuphar advena GN=ycf1 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.022e-44
Identity = 107/232 (46.12%), Postives = 141/232 (60.78%), Query Frame = 1
Query:   91 CNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKH----GIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSY-EKNGLTHYEKQHFFEADLLR--NQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEY--YSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            C+L S SQ  AYVFYKLLQ  + N Y    + QY+ T  F+K+ IKD+F  +    GI + + +HK L N G N  K+ L  HYQY+LSR KW+ L P +WRN+ NQH   +N DL K DSY EK+ L H E + F++  LL+  +     KKHYRYDLLSYK +NYE  KDS I  S +QVN   E    SNYN  K K   +   I+IN+ + +  I+D ++ L RKYF+
Sbjct: 1198 CDLSSLSQ--AYVFYKLLQTQVSNKYKSESIFQYYRTYPFIKDRIKDYFHNYFHTRGISDSESKHKKLRNSGMNEWKNWLRNHYQYNLSRAKWSGLAPLKWRNKVNQHRTIKNNDLQKLDSYEEKDQLIHSEIKDFYKLGLLKSPSHTKKMKKHYRYDLLSYKYINYEYVKDSNIYGSPLQVNRHGEILSLSNYNTHKYKSFYV---ITINDCLEDKYIIDTDQNLDRKYFE 1424          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_AETCO (Putative membrane protein ycf1 OS=Aethionema cordifolium GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.694e-42
Identity = 93/222 (41.89%), Postives = 134/222 (60.36%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYH--GTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRN--QKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL Q+ + NF  LR VL+Y+  GTSLF+ N+IKDFF+KHGIF+Y+L+ K   N   N  K+ L  HYQY+L  I WARLV ++W+N+ NQ+ +  NK L K DSYEKN   +Y+K ++ +AD L N  QK NFKK   Y++  YKS+N ++K                          + L  ++ +  ++++ G+ +I D+ +F  RKY +W
Sbjct: 1156 SLSQAYVFYKLSQLQVSNFSKLRAVLEYNICGTSLFVTNQIKDFFQKHGIFHYKLKEKTFLNSEINPWKNWLRSHYQYNLPEIVWARLVTEKWKNQINQNSLVLNKSLNKEDSYEKNKFDNYKKLNYLKADSLLNPKQKQNFKKDSIYNIFCYKSINSKEKSFD-----------------------MPLEIIIDNFLVSSFRGKSNIRDIGEFRTRKYLEW 1354          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_NYMAL (Putative membrane protein ycf1 OS=Nymphaea alba GN=ycf1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.230e-42
Identity = 104/237 (43.88%), Postives = 139/237 (58.65%), Query Frame = 1
Query:   91 CNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKH----GIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSY-EKNGLTHYEKQHFFEADLLR---------NQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            C+L S SQ  AYVFYKLLQ  + N Y    +  Y+ T  F+K+ IKD+F  +    GIF+ + +HK L N G +  K+ L  HYQY+LS  KW+RL P +WR + NQH   QN D  K  SY EK+ L H  K+ + +  LL+         +++   KKHYRYDLLSYK LNYED KDS I  S +QVN   E  SNYN  K K      +I+IN+ + +   +D ++ L RKYF+
Sbjct: 1277 CDLSSLSQ--AYVFYKLLQTQVSNKYKSESIFHYYRTYPFIKDGIKDYFHDYFHTRGIFDSESKHKKLRNSGMSEWKNWLKSHYQYNLSHDKWSRLAPLKWRKKVNQHRTIQNNDSPKSGSYEEKDQLIHSGKKDYSKLGLLKSPSREMKSPSREKKIKKHYRYDLLSYKYLNYEDVKDSNIYGSPLQVNRHGE-ISNYNTHKYK---SFYAITINDSLEDKYTIDRDQNLDRKYFE 1507          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_AETGR (Putative membrane protein ycf1 OS=Aethionema grandiflora GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.230e-42
Identity = 93/220 (42.27%), Postives = 131/220 (59.55%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYH--GTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL Q+ + NF  LR VL+Y+   TSLF+KN+IKDFF++HGIF+Y+L+ K   N   N  K+ L  HYQY+L  I WARLV ++W+N+ NQ  +  N+ L K DSYEKN   +Y+K + FEAD L N K N KK Y Y+L  Y S+N    K++  D                    + L  ++ +  ++++ G+ +I  + KF  RK+ DW
Sbjct: 1166 SLSQAYVFYKLSQLQVSNFSKLRAVLEYNICVTSLFVKNQIKDFFQEHGIFHYKLKEKTFLNSESNQWKNWLRSHYQYNLPEIVWARLVTEKWKNKINQDSLVLNQSLNKEDSYEKNQFDNYKKLNSFEADSLLNPKQNLKKDYIYNLFCYNSIN---SKETIFD--------------------MPLDIIIDNFLVSSFRGKSNIRGIGKFRTRKFLDW 1362          
The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
YCF1_CUCSA1.072e-4945.22Putative membrane protein ycf1 OS=Cucumis sativus ... [more]
YCF1_SPIOL1.829e-4947.92Putative membrane protein ycf1 OS=Spinacia olerace... [more]
YCF1_ILLOL1.829e-4942.38Putative membrane protein ycf1 OS=Illicium oligand... [more]
YCF1_CALFG1.186e-4843.41Putative membrane protein ycf1 OS=Calycanthus flor... [more]
YCF1_DIOEL4.217e-4647.53Putative membrane protein ycf1 OS=Dioscorea elepha... [more]
YCF1B_PIPCE1.603e-4542.48Putative membrane protein ycf1 C-terminal part OS=... [more]
YCF1_NUPAD3.022e-4446.12Putative membrane protein ycf1 OS=Nuphar advena GN... [more]
YCF1_AETCO3.694e-4241.89Putative membrane protein ycf1 OS=Aethionema cordi... [more]
YCF1_NYMAL8.230e-4243.88Putative membrane protein ycf1 OS=Nymphaea alba GN... [more]
YCF1_AETGR8.230e-4242.27Putative membrane protein ycf1 OS=Aethionema grand... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B11-C21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bp
GAAAGAATTAATAAAACAAATAAAAATAGAATTATTTCGACTATCCAAAA
ATTGATTTCTAAGACTAGTAATAAGAATTCAAAGATTTCTTGTAATTTAT
TGTCTTTTTCACAATCACAAGCATATGTATTTTACAAATTATTACAAGTC
CCAATTTTGAACTTTTATAATTTAAGACCCGTTCTTCAATATCACGGAAC
ATCTCTATTTCTTAAGAATGAAATAAAAGATTTTTTTGAAAAACACGGAA
TCTTTAATTACCAATTAAGACATAAACCCCTTTGGAATTTTGGAAGGAAT
ACACGAAAACACTGTTTAAGCGGGCATTATCAATATGATTTATCTCGGAT
TAAATGGGCTAGATTAGTACCACAAGAATGGCGAAATAGAGCCAATCAAC
ACTGTATGGCTCAAAATAAAGATTTAATTAAAAGAGATTCGTATGAAAAA
AATGGATTAACTCATTACGAAAAACAACATTTTTTTGAAGCAGACCTATT
ACGTAATCAAAAATCGAATTTTAAAAAACACTATAGATATGATCTTTTAT
CATATAAATCGCTTAATTATGAAGATAAGAAAGACTCGTATATTGATAGA
TCACTAGTCCAAGTAAATAATAAAGAAGAGTATTATTCTAATTACAATAG
AAAGAAAGTAAAATTGTTGGCTATGCTGGGAAGTATCTCTATCAATAATT
ATATAGGGGAAGATGATATTATGGATATGGAAAAATTCTTGTATAGAAAA
TATTTTGATTGGA
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