CX069843

Overview
NameCX069843
Unique NameCX069843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2915 contig Csv1_Contig2915:72..834. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_AMBTC (Putative membrane protein ycf1 OS=Amborella trichopoda GN=ycf1 PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.128e-41
Identity = 95/220 (43.18%), Postives = 134/220 (60.91%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRD--SYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEE-YYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            S SQAYVFYKL Q P +  Y L  + QY   +  +K+ IKD+ E   IF+ + +HK   NFG N  K+ L G+YQY+ S  +W+RL PQ+WRN+ N+ CM +NKD  K D  SYEK+ L ++E+   + ADLL+N K    K YRYDLLSY+ +N+ +    Y  RSL+QVN ++     + +   +     L   +I++Y+ E  I+DMEK   RKYFD
Sbjct: 1121 SLSQAYVFYKLSQKPGIKKYRLGSLFQYR-RAYSIKDRIKDYLEIERIFHSESKHKKPGNFGMNEWKNWLIGNYQYNFSYTRWSRLDPQKWRNKVNEQCMIKNKDSKKTDSYSYEKDPLINHERHILYSADLLQNHKKKLSKRYRYDLLSYRYINFGNNSSIY--RSLLQVNEEQRILILSSHSHIIHKYEQLNLPAISDYLEERFIVDMEKKTDRKYFD 1337          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_RANMC (Putative membrane protein ycf1 OS=Ranunculus macranthus GN=ycf1 PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.516e-40
Identity = 91/218 (41.74%), Postives = 130/218 (59.63%), Query Frame = 1
Query:  115 SQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGH--YQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            SQAYVFYKL Q+ + N YNL+ + QYHGT  F+K++IK FF   GIFN + RHK   +FG N  +  L G+  YQY+LS+  W+ LVPQ+WRNR N++ +A + +      YEK  L HYEK+  +  + L +++    K+Y+YDLLS K +NYE+   S      ++VN       NYN    ++  + G I   NY+ ED  +D ++   RKY DW
Sbjct: 1128 SQAYVFYKLSQIQVSNKYNLKSLFQYHGTIPFIKDKIKIFFGTQGIFNSESRHKNFHDFGMNEWQSWLMGNDQYQYNLSQTCWSGLVPQKWRNRINKN-LANSSNFY---FYEKEPLIHYEKEKNYAVNSLPSRREKL-KNYKYDLLSNKYINYENNSSSSFYGLPLEVNQAHAILYNYNTYNSEVFDLSGDIDFRNYLREDYDIDRDQNSDRKYLDW 1340          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LOTJA (Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.993e-39
Identity = 110/263 (41.83%), Postives = 146/263 (55.51%), Query Frame = 1
Query:    1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQ-SQAYVFYKLLQVPILNFYN--LRPVLQYHGTSLFLKNEIKD-FFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGL---THYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKD--SYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E I+KTN++ II  I                N    S  SQAYVF+K+ Q+ +LN Y    + V  Y G S F+K+EIKD FF   GI + +LRHK      +N   + L  HYQYDLS+ +W+RLV +  +NR N+H + QNKDL K DSY+K  L    + ++Q  F  +LL  +K   KK  RYDLL YK +NY +KK+   Y  RS  Q N K     +YN +K +    +  ISI NYI ED I  +E+   RKYFDW
Sbjct: 1137 EIIDKTNQS-IIHFISIINKSSNTKNTNSAANSYEVSALSQAYVFFKISQIQVLNVYKYKFKYVFDYDGRSFFIKDEIKDYFFGIQGIIHSKLRHKNSPVSLKNQWTNWLKVHYQYDLSQNRWSRLVQKNLKNRINKHRLDQNKDLTKCDSYKKTQLIVSKNKKQQVDFLVNLLIQKK--IKKQSRYDLLLYKFINYAEKKELSIYGYRSPFQANKKRAISYDYNTQKKEFFDRMDDISIKNYIAEDAIRYIEQNRDRKYFDW 1396          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_PHAVU (Putative membrane protein ycf1 OS=Phaseolus vulgaris GN=ycf1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.521e-39
Identity = 102/223 (45.74%), Postives = 130/223 (58.30%), Query Frame = 1
Query:  115 SQAYVFYKLLQVPILNF--YNLRPVLQYHGTSLFLKNEIKD-FFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHY-QYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYI--DRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDD-IMDMEKFLYRKYFDW 762
            SQAYVF+ LLQ  I+N   Y LR + +YH    F+KN+IK+ FF   GI + +L  K L N  RN   + L  HY QYDLS  +W++L+ Q+WRNR  +  +AQN +L K DSY K+ L  Y++Q           K   +K YRYDLLSY  +NY +KKDSYI   RSL Q N      SNYN  K  L   + +I I NY  ED  I+D+EK   RKY DW
Sbjct: 1175 SQAYVFFNLLQTRIININIYKLRLLFEYHKNFFFVKNKIKNSFFGAQGIVHSKLEQKNLLNSKRNQWTNWLKNHYYQYDLSNSRWSKLLSQKWRNRITKFGVAQNPNLTKWDSYGKSPLIIYKEQQGAAL------KKKIRKQYRYDLLSYNFMNYANKKDSYIYGYRSLFQSNKNIWISSNYNTYKKNLFDRISNIFIKNY--EDAIIIDIEKNSNRKYLDW 1389          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_OENEH (Putative membrane protein ycf1 OS=Oenothera elata subsp. hookeri GN=ycf1 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 3.237e-38
Identity = 96/236 (40.68%), Postives = 136/236 (57.63%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVP---ILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKS--------------NFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINN-YIGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL Q     +++   LR VLQY GTS FLK E+KD+FE   +F+ +L+HK   N G+N  K+ L   +QY +S I W  L PQ+WR + NQ  M +N DL KR S EK       ++ FFEA+ L ++++              N  K Y YDL SY+S+N EDK         V +NNK++   NYNR+KV L+     I+++N ++ ++D++D+  F  RKY  W
Sbjct: 1637 SMSQAYVFYKLYQTQQTQLIHLDKLRYVLQYDGTSRFLKKELKDYFEAQELFHSKLKHKNSLNSGKNQWKNWLKAQHQYSVSPIIWNSLSPQKWRTKVNQERMDENTDLNKRYSNEK-------RKQFFEANSLDDEENVVETYLGQRAGDIKNSIKSYSYDLFSYQSINSEDK--------YVCINNKQKNSYNYNRRKVNLVDSPEGIALSNQFLVQNDLLDLYTFPDRKYVPW 1857          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_ARATH (Putative membrane protein ycf1 OS=Arabidopsis thaliana GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.227e-38
Identity = 88/220 (40.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL Q+ + NF  L+ VL+Y+   TS F+KN+IK FF++HGIF+Y+L++K   N   N  K+ L   YQY+L +I WARLV Q W+N+ N+  +  N  L K DSYEK    +Y+KQ FFEAD L N K N KK   Y+L  YKS++  +K                    N++   + +   L +  +++++ + +I  M +  +RKY DW
Sbjct: 1150 SLSQAYVFYKLSQIKVSNFCKLKAVLEYNICITSFFVKNKIKVFFQEHGIFHYELKNKTFLNSEVNQWKNWLRSQYQYNLPQISWARLVTQNWKNKINKDSLVLNPSLTKEDSYEKKKFDNYKKQKFFEADSLLNPKHNVKKDSIYNLFCYKSIHSTEK--------------------NFD---MSIGIALDNCLVSSFLEKYNIRGMGEIRHRKYLDW 1346          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CAPBU (Putative membrane protein ycf1 OS=Capsella bursa-pastoris GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.210e-38
Identity = 87/220 (39.55%), Postives = 126/220 (57.27%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL Q+ + N   L+ VL+Y+   TS F+KN+IK FF++ GIF+Y+L++K   N   N  K+ L  HYQY+L +I WARLV Q W+ + N+  +  N  L K DSYEK    +Y+KQ+FFEAD + N K NFKK Y Y+L  YKS                 ++  E ++  Y      +   L +  +++ + + +I  M +  +RKY DW
Sbjct: 1155 SLSQAYVFYKLSQIKVSNVSKLKDVLEYNICITSFFVKNKIKSFFQEQGIFHYELKNKTFLNSEVNQWKNWLRSHYQYNLPQIAWARLVTQNWKKKINKDSLVLNPSLTKEDSYEKKKFDNYKKQNFFEADSVLNPKHNFKKDYIYNLFCYKS-----------------IHPTENFFDMY------VGIALDNCLVSSCLEKYNIRGMREIWHRKYVDW 1351          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_OLIPU (Putative membrane protein ycf1 OS=Olimarabidopsis pumila GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.417e-38
Identity = 87/220 (39.55%), Postives = 127/220 (57.73%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL Q+ + NF  L+ V +Y+   TS F+KN+IK FF++ GIF+Y+L++K   N   N  K+ L  HYQY+L +I WARLV Q W+ + N+  +  N  L K DSYEK    +Y+KQ+FFEAD L N K NFKK   Y+L  YKS++  +K    +D S+                       L +  +++++ + +I  + +  +RKY DW
Sbjct: 1160 SLSQAYVFYKLSQIKVSNFSKLKDVFEYNIRITSFFVKNQIKVFFQEQGIFHYELKNKTFLNSEVNQWKNWLRSHYQYNLPQIAWARLVTQNWKKKINKDSLVLNPSLTKEDSYEKKKFDNYKKQNFFEADALLNPKHNFKKDSIYNLFCYKSIHSTEKN---LDMSIG--------------------IALDNCLVSSFLEKYNIRGIGEIRHRKYLDW 1356          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_ACOCL (Putative membrane protein ycf1 OS=Acorus calamus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.417e-38
Identity = 104/259 (40.15%), Postives = 147/259 (56.76%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDS--YEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSL--NYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            E+I++TN+N I  ISTI+                  S   SQAYV YKL Q  ++  Y L+ VLQYH    FLK+ IKD F    I + + R K L     N  K+ L GHYQY+LS+ +W+ LVP++WR + NQ  + +NK   K +S   EKN   HY K+  +  D L +QK   KK YRYDLLS+K +  NYED++ S I R  +Q+N   E   +YNR++     +L  + I++Y+GE+  + ++K   RKYFD
Sbjct: 1204 EKIDETNQNTIHFISTIRNSFSNSNLNNKSKIYWDFSLL-SQAYVLYKLSQTQVIKRYQLKSVLQYHRAYPFLKDRIKDLFGTPRIVHAKSRPKKLPISRINAWKNWLRGHYQYNLSQTRWSELVPKKWREKFNQRTI-KNKYSRKLNSSEKEKNQQAHYAKEISYVVDSLSSQKGKLKKDYRYDLLSHKYINSNYEDREYSDISRLSLQINGDREIPYDYNRQESDY--VLVGLPISDYLGEEYFIGVDKNSDRKYFD 1458          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_ACOAM (Putative membrane protein ycf1 OS=Acorus americanus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.417e-38
Identity = 104/259 (40.15%), Postives = 147/259 (56.76%), Query Frame = 1
Query:    1 ERINKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDS--YEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSL--NYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFD 759
            E+I++TN+N I  ISTI+                  S   SQAYV YKL Q  ++  Y L+ VLQYH    FLK+ IKD F    I + + R K L     N  K+ L GHYQY+LS+ +W+ LVP++WR + NQ  + +NK   K +S   EKN   HY K+  +  D L +QK   KK YRYDLLS+K +  NYED++ S I R  +Q+N   E   +YNR++     +L  + I++Y+GE+  + ++K   RKYFD
Sbjct: 1204 EKIDETNQNTIHFISTIRNSFSNSNLNNKSKIYWDFSLL-SQAYVLYKLSQTQVIKRYQLKSVLQYHRAYPFLKDRIKDLFGTPRIVHAKSRPKKLPISRINAWKNWLRGHYQYNLSQTRWSELVPKKWREKFNQRTI-KNKYSRKLNSSEKEKNQQAHYAKEISYVVDSLSSQKGKLKKDYRYDLLSHKYINSNYEDREYSDISRLSLQINGDREIPYDYNRQESDY--VLVGLPISDYLGEEYFIGVDKNSDRKYFD 1458          
The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
YCF1_AMBTC3.128e-4143.18Putative membrane protein ycf1 OS=Amborella tricho... [more]
YCF1_RANMC4.516e-4041.74Putative membrane protein ycf1 OS=Ranunculus macra... [more]
YCF1_LOTJA4.993e-3941.83Putative membrane protein ycf1 OS=Lotus japonicus ... [more]
YCF1_PHAVU6.521e-3945.74Putative membrane protein ycf1 OS=Phaseolus vulgar... [more]
YCF1_OENEH3.237e-3840.68Putative membrane protein ycf1 OS=Oenothera elata ... [more]
YCF1_ARATH4.227e-3840.00Putative membrane protein ycf1 OS=Arabidopsis thal... [more]
YCF1_CAPBU7.210e-3839.55Putative membrane protein ycf1 OS=Capsella bursa-p... [more]
YCF1_OLIPU9.417e-3839.55Putative membrane protein ycf1 OS=Olimarabidopsis ... [more]
YCF1_ACOCL9.417e-3840.15Putative membrane protein ycf1 OS=Acorus calamus G... [more]
YCF1_ACOAM9.417e-3840.15Putative membrane protein ycf1 OS=Acorus americanu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B11-C21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bp
GAAAGAATTAATAAAACAAATAAAAATAGAATTATTTCGACTATCCAAAA
ATTGATTTCTAAGACTAGTAATAAGAATTCAAAGATTTCTTGTAATTTAT
TGTCTTTTTCACAATCACAAGCATATGTATTTTACAAATTATTACAAGTC
CCAATTTTGAACTTTTATAATTTAAGACCCGTTCTTCAATATCACGGAAC
ATCTCTATTTCTTAAGAATGAAATAAAAGATTTTTTTGAAAAACACGGAA
TCTTTAATTACCAATTAAGACATAAACCCCTTTGGAATTTTGGAAGGAAT
ACACGAAAACACTGTTTAAGCGGGCATTATCAATATGATTTATCTCGGAT
TAAATGGGCTAGATTAGTACCACAAGAATGGCGAAATAGAGCCAATCAAC
ACTGTATGGCTCAAAATAAAGATTTAATTAAAAGAGATTCGTATGAAAAA
AATGGATTAACTCATTACGAAAAACAACATTTTTTTGAAGCAGACCTATT
ACGTAATCAAAAATCGAATTTTAAAAAACACTATAGATATGATCTTTTAT
CATATAAATCGCTTAATTATGAAGATAAGAAAGACTCGTATATTGATAGA
TCACTAGTCCAAGTAAATAATAAAGAAGAGTATTATTCTAATTACAATAG
AAAGAAAGTAAAATTGTTGGCTATGCTGGGAAGTATCTCTATCAATAATT
ATATAGGGGAAGATGATATTATGGATATGGAAAAATTCTTGTATAGAAAA
TATTTTGATTGGA
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