CX069843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LEPVR (Putative membrane protein ycf1 OS=Lepidium virginicum GN=ycf1-A PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.740e-37 Identity = 87/200 (43.50%), Postives = 120/200 (60.00%), Query Frame = 1 Query: 1 ERINKTNKNR----IISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKK 582 E++ K NK + ISTI+ C+L SQAYVFYKL Q+ + NF L+ VL+Y+ TS F+KN+IKDFF++ GIF+Y+L+ K +N N K+ L HYQY+L ++ WARLV Q+W+ + Q + N L K DSYEK + +K +FFEA+LL N K N KK Y+L YKS+N +KK Sbjct: 1073 EKVEKINKKKNTIYFISTIKNLISNKKKISYDL-CSL-----SQAYVFYKLSQIQVSNFSKLKAVLEYNICITSFFVKNQIKDFFQEQGIFHYELKDKTFFNSEVNQWKNWLRSHYQYNLPQVAWARLVTQKWKTKITQDSLVLNPSLTKEDSYEKKKFDNSKKDNFFEANLLLNPKHNLKKDSIYNLFCYKSINSTEKK 1266
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LOBMA (Putative membrane protein ycf1 OS=Lobularia maritima GN=ycf1-A PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.104e-37 Identity = 91/225 (40.44%), Postives = 124/225 (55.11%), Query Frame = 1 Query: 109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNY-----IGEDDIMDMEKFLYRKYFDW 762 S SQAYVFYKL ++ + N L+ VL+Y TS F+KN+IKDFF++ GIF+Y+L+ K N N K+ L H QY+L +I WARL Q+W+N+ NQ + N+ L K DSYEK +Y+KQ+FFEAD L N K N KK Y Y+L YKS+N +K L M I+++NY + + +I K +RKY DW Sbjct: 1159 SLSQAYVFYKLSKMQVSNVSKLKAVLEYKICITSFFVKNKIKDFFQEQGIFDYELKDKTFVNSEVNQWKNWLRSHSQYNLPQIAWARLGTQKWKNKINQDSIVLNRSLTKEDSYEKKIFDNYKKQNFFEADSLLNPKHNVKKDYIYNLFCYKSINSTEKN----------------------------LDMAIGIALDNYLVSCFLEKYNIRGRRKIGHRKYLDW 1355
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_ARAHI (Putative membrane protein ycf1 OS=Arabis hirsuta GN=ycf1-A PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.041e-36 Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 1 Query: 109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKK 582 S SQAYVFYKL Q+ + NF L+ VL+Y+ TS F+KN+IKDF ++ GIF+Y+L+ K +N N K+ L H QY+L I WARLV Q+W+ + NQ + N LIK D YEKN + +Y+KQ FFEA+ L N K N KK Y Y+ Y+S++ +KK Sbjct: 1160 SLSQAYVFYKLSQIQVSNFSKLKAVLEYNICITSFFVKNQIKDFCQEQGIFHYELKDKTFFNSEVNPWKYWLRSHSQYNLPWIAWARLVTQKWKKKINQDFLVLNTSLIKTDLYEKNKIDNYKKQQFFEANSLLNSKHNLKKDYIYNSFCYRSIHSREKK 1319
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_BARVE (Putative membrane protein ycf1 OS=Barbarea verna GN=ycf1-A PE=3 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.776e-36 Identity = 78/159 (49.06%), Postives = 106/159 (66.67%), Query Frame = 1 Query: 109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDK 579 S SQAYVFYKL Q+ + NF L+ VL+Y+ TSLF+KN+IKDFF++ GIF+Y L+ K +N N K+ L +YQY+L +I WARLV ++W+ + NQ + N L K DSYEK +Y+KQ FEAD L N K N KK+ Y+L YKS++ +K Sbjct: 1157 SLSQAYVFYKLSQIQVSNFSKLKAVLEYNICITSLFVKNQIKDFFQEQGIFHYDLKDKTFFNSEVNQWKNWLRSNYQYNLPQIAWARLVTKKWKKKINQDSLVLNPSLTKEDSYEKKKFDNYKKQSVFEADSLLNPKHNLKKNSIYNLFCYKSIHSTEK 1315
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CRUWA (Putative membrane protein ycf1 OS=Crucihimalaya wallichii GN=ycf1-A PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.319e-36 Identity = 94/256 (36.72%), Postives = 138/256 (53.91%), Query Frame = 1 Query: 1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 E+ NK N ISTI+ C+L SQAYVFYKL Q+ I NF L+ VL+Y+ TS F+KN+IK FF++ GIF Y+L++K N N K+ L HYQY+L +I WARLV ++W+ + Q + N L K DSYEK + +Y+KQ+FFEA+ L K N KK Y++ YKS++ +K +D S + L + +++++ + +I + + YRKY DW Sbjct: 1129 EKKNKKNTIYFISTIKNLISNKKKISYDL-CSL-----SQAYVFYKLSQIKISNFSKLKAVLEYNICITSFFVKNQIKVFFQEQGIFQYELKNKTFLNSEVNQWKNWLRSHYQYNLPQIAWARLVTEKWKKKITQDSLVLNPSLTKEDSYEKKIVDNYKKQNFFEANSLVTPKHNLKKDSIYNIFCYKSIHCTEKN---VDMS--------------------ISIALDNCLVSSFLEKYNIRGIGEIQYRKYLDW 1355
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_DRANE (Putative membrane protein ycf1 OS=Draba nemorosa GN=ycf1-A PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.814e-36 Identity = 96/258 (37.21%), Postives = 139/258 (53.88%), Query Frame = 1 Query: 10 NKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKN---GLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 NK KN I ISTI+ C+L SQAYVFYKL Q+ + NF L+ VL+Y+ TS F+KN++KD ++ GI +Y+L+ K N N KH L + QY+L ++ WARLV Q W+ + NQ + N+ LIK DSYEKN +Y+KQ+FFEA+ L N K N KK YRY+L YK ++ +K D S+ L + +++++ + +I +E+ +RKY DW Sbjct: 1135 NKNKKNTIFFISTIKNLISKKKIFSYDL-CSL-----SQAYVFYKLSQIQVSNFSKLKAVLEYNICITSFFIKNQLKDLVQEQGILDYELKDKTFLNSQVNQWKHWLRSNSQYNLPQVAWARLVTQRWKKKINQDSLVLNQSLIKTDSYEKNKFDKFDNYKKQNFFEANSLLNPKLNLKKDYRYNLFCYKFIHSREK---MFDMSIG--------------------IALDNCLVSSFLEKYNIRVIEEIGHRKYLDW 1363
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_NASOF (Putative membrane protein ycf1 OS=Nasturtium officinale GN=ycf1-A PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34 Identity = 77/162 (47.53%), Postives = 104/162 (64.20%), Query Frame = 1 Query: 109 SQSQAYVFYKLLQVPILN---FYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDK 579 S SQAYVFYK+ Q+ + + F L+ VL+Y+ TS FLKN+IKDFF++ GIF+Y+L+ K L N N K+ L +YQY+L +I WARL Q+W+ + NQ + N L DSYEK +Y+K+ FFEAD L N K N KK Y+L YKS+N +K Sbjct: 1165 SLSQAYVFYKISQIKVSHVSKFSKLKAVLEYNRCITSFFLKNQIKDFFQEQGIFHYKLKDKTLLNSEVNHWKNWLRSNYQYNLPQIAWARLGTQKWKKKINQDYLVLNPSLTNEDSYEKKKFDNYQKKSFFEADSLLNPKHNLKKDSIYNLFCYKSINSTEK 1326
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_JASNU (Putative membrane protein ycf1 OS=Jasminum nudiflorum GN=ycf1-A PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32 Identity = 98/227 (43.17%), Postives = 124/227 (54.63%), Query Frame = 1 Query: 115 SQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEAD-------LLRNQK-SNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLL---AMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 SQAYVFYKL ++ + N + VLQY G FL++EIKD F+ GI + K L + N K+ L GH QYDLS+ +W+ L+PQ WRNR H M + K+ KR+ YEK YEK F ++ RNQK NF+K +YDLLSYKS++ E+KKDS RSL ++ N N LL A I INN G DI EK RKY DW Sbjct: 1210 SQAYVFYKLSEIQLSNLDKFKSVLQYQGIPFFLRSEIKDSFKTQGI----VHSKRLPSSEMNQWKNWLRGHSQYDLSKTRWSILIPQRWRNRV--HRMVKRKNFNKRNLYEK-----YEKDQFIDSKKENICEVSNRNQKDDNFQKCCKYDLLSYKSIHSENKKDS---RSLF-----DKLSFNSNTAFFDLLVDRARGMPIDINNLTGTGDIPYTEKTPDRKYLDW 1417
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSEX (Putative membrane protein ycf1 OS=Cuscuta exaltata GN=ycf1 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30 Identity = 93/254 (36.61%), Postives = 133/254 (52.36%), Query Frame = 1 Query: 7 INKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQE--WRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 INK KN+I + C+ + SQ AYVFYK+ Q +LN L VLQ+ S F++ +IKD GIF ++ H+ L + K+ L + +YDLS I W L+ Q+ WRNR ++ + K L K +S+ K L+ Y+KQ+ ++ + NQK N KK Y+YDLLSYKS+NYE K S + RS +V + Y N N + L A+ + +I I DI + K L RKY W Sbjct: 994 INKETKNKIHFLSKLKTSKNCKKNLDLSCDFSNLSQ--AYVFYKISQTGVLNICKLISVLQHTVISFFIQTQIKDLVHTEGIFKSEVIHQKLQWPKTSQWKNWLRLNSKYDLSPIFWFSLISQKQKWRNRVTKYHRPKEKYLNKWNSHGKYRLSDYKKQNVPKS--VSNQKDNSKKCYQYDLLSYKSINYEKKSASVLYRSTPKVTKGQAIYHNDNMSQNYLFAI--TPNIPGKIKRVDIPYIGKNLDRKYLIW 1241
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSRE (Putative membrane protein ycf1 OS=Cuscuta reflexa GN=ycf1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.406e-25 Identity = 90/257 (35.02%), Postives = 123/257 (47.86%), Query Frame = 1 Query: 7 INKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLV--PQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQ---VNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762 INK KN+ + C+L + SQ AYVFYK+ Q +LN L LQ +G F+K +IKD F GI Y+L K L N K+ L + +YDLS I W L+ Q+WRNR Q+ ++ K L KR+S L+ +KQ ++ + N+KK Y+YDLLSYKS+NY K S I RS + ++ + N K +L I+ YIG K L RKY W Sbjct: 1063 INKETKNKFNLISKLKTYNHCKKNSYLSCDLSNLSQ--AYVFYKIPQTGVLNVCKLISALQQNGIPSFIKTQIKDSFHTQGICKYELIQKKLQWPKTNQWKNWLRVNSEYDLSHILWFSLISQKQKWRNRVEQYHRSKEKYLNKRNSRGNYRLSDSKKQ-----NVPKPVSDNYKKCYQYDLLSYKSINYAKKSASVISRSTPKGQAISYNDNMLQNIPGKIKRLY-----ITYIPYIG--------KTLDRKYLIW 1299 The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bpback to top |