CX069843

Overview
NameCX069843
Unique NameCX069843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2915 contig Csv1_Contig2915:72..834. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LEPVR (Putative membrane protein ycf1 OS=Lepidium virginicum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.740e-37
Identity = 87/200 (43.50%), Postives = 120/200 (60.00%), Query Frame = 1
Query:    1 ERINKTNKNR----IISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKK 582
            E++ K NK +     ISTI+              C+L     SQAYVFYKL Q+ + NF  L+ VL+Y+   TS F+KN+IKDFF++ GIF+Y+L+ K  +N   N  K+ L  HYQY+L ++ WARLV Q+W+ +  Q  +  N  L K DSYEK    + +K +FFEA+LL N K N KK   Y+L  YKS+N  +KK
Sbjct: 1073 EKVEKINKKKNTIYFISTIKNLISNKKKISYDL-CSL-----SQAYVFYKLSQIQVSNFSKLKAVLEYNICITSFFVKNQIKDFFQEQGIFHYELKDKTFFNSEVNQWKNWLRSHYQYNLPQVAWARLVTQKWKTKITQDSLVLNPSLTKEDSYEKKKFDNSKKDNFFEANLLLNPKHNLKKDSIYNLFCYKSINSTEKK 1266          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_LOBMA (Putative membrane protein ycf1 OS=Lobularia maritima GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.104e-37
Identity = 91/225 (40.44%), Postives = 124/225 (55.11%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNY-----IGEDDIMDMEKFLYRKYFDW 762
            S SQAYVFYKL ++ + N   L+ VL+Y    TS F+KN+IKDFF++ GIF+Y+L+ K   N   N  K+ L  H QY+L +I WARL  Q+W+N+ NQ  +  N+ L K DSYEK    +Y+KQ+FFEAD L N K N KK Y Y+L  YKS+N  +K                             L M   I+++NY     + + +I    K  +RKY DW
Sbjct: 1159 SLSQAYVFYKLSKMQVSNVSKLKAVLEYKICITSFFVKNKIKDFFQEQGIFDYELKDKTFVNSEVNQWKNWLRSHSQYNLPQIAWARLGTQKWKNKINQDSIVLNRSLTKEDSYEKKIFDNYKKQNFFEADSLLNPKHNVKKDYIYNLFCYKSINSTEKN----------------------------LDMAIGIALDNYLVSCFLEKYNIRGRRKIGHRKYLDW 1355          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_ARAHI (Putative membrane protein ycf1 OS=Arabis hirsuta GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.041e-36
Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKK 582
            S SQAYVFYKL Q+ + NF  L+ VL+Y+   TS F+KN+IKDF ++ GIF+Y+L+ K  +N   N  K+ L  H QY+L  I WARLV Q+W+ + NQ  +  N  LIK D YEKN + +Y+KQ FFEA+ L N K N KK Y Y+   Y+S++  +KK
Sbjct: 1160 SLSQAYVFYKLSQIQVSNFSKLKAVLEYNICITSFFVKNQIKDFCQEQGIFHYELKDKTFFNSEVNPWKYWLRSHSQYNLPWIAWARLVTQKWKKKINQDFLVLNTSLIKTDLYEKNKIDNYKKQQFFEANSLLNSKHNLKKDYIYNSFCYRSIHSREKK 1319          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_BARVE (Putative membrane protein ycf1 OS=Barbarea verna GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.776e-36
Identity = 78/159 (49.06%), Postives = 106/159 (66.67%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDK 579
            S SQAYVFYKL Q+ + NF  L+ VL+Y+   TSLF+KN+IKDFF++ GIF+Y L+ K  +N   N  K+ L  +YQY+L +I WARLV ++W+ + NQ  +  N  L K DSYEK    +Y+KQ  FEAD L N K N KK+  Y+L  YKS++  +K
Sbjct: 1157 SLSQAYVFYKLSQIQVSNFSKLKAVLEYNICITSLFVKNQIKDFFQEQGIFHYDLKDKTFFNSEVNQWKNWLRSNYQYNLPQIAWARLVTKKWKKKINQDSLVLNPSLTKEDSYEKKKFDNYKKQSVFEADSLLNPKHNLKKNSIYNLFCYKSIHSTEK 1315          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CRUWA (Putative membrane protein ycf1 OS=Crucihimalaya wallichii GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.319e-36
Identity = 94/256 (36.72%), Postives = 138/256 (53.91%), Query Frame = 1
Query:    1 ERINKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            E+ NK N    ISTI+              C+L     SQAYVFYKL Q+ I NF  L+ VL+Y+   TS F+KN+IK FF++ GIF Y+L++K   N   N  K+ L  HYQY+L +I WARLV ++W+ +  Q  +  N  L K DSYEK  + +Y+KQ+FFEA+ L   K N KK   Y++  YKS++  +K    +D S                    +   L +  +++++ + +I  + +  YRKY DW
Sbjct: 1129 EKKNKKNTIYFISTIKNLISNKKKISYDL-CSL-----SQAYVFYKLSQIKISNFSKLKAVLEYNICITSFFVKNQIKVFFQEQGIFQYELKNKTFLNSEVNQWKNWLRSHYQYNLPQIAWARLVTEKWKKKITQDSLVLNPSLTKEDSYEKKIVDNYKKQNFFEANSLVTPKHNLKKDSIYNIFCYKSIHCTEKN---VDMS--------------------ISIALDNCLVSSFLEKYNIRGIGEIQYRKYLDW 1355          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_DRANE (Putative membrane protein ycf1 OS=Draba nemorosa GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.814e-36
Identity = 96/258 (37.21%), Postives = 139/258 (53.88%), Query Frame = 1
Query:   10 NKTNKNRI--ISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKN---GLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            NK  KN I  ISTI+              C+L     SQAYVFYKL Q+ + NF  L+ VL+Y+   TS F+KN++KD  ++ GI +Y+L+ K   N   N  KH L  + QY+L ++ WARLV Q W+ + NQ  +  N+ LIK DSYEKN      +Y+KQ+FFEA+ L N K N KK YRY+L  YK ++  +K     D S+                       L +  +++++ + +I  +E+  +RKY DW
Sbjct: 1135 NKNKKNTIFFISTIKNLISKKKIFSYDL-CSL-----SQAYVFYKLSQIQVSNFSKLKAVLEYNICITSFFIKNQLKDLVQEQGILDYELKDKTFLNSQVNQWKHWLRSNSQYNLPQVAWARLVTQRWKKKINQDSLVLNQSLIKTDSYEKNKFDKFDNYKKQNFFEANSLLNPKLNLKKDYRYNLFCYKFIHSREK---MFDMSIG--------------------IALDNCLVSSFLEKYNIRVIEEIGHRKYLDW 1363          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_NASOF (Putative membrane protein ycf1 OS=Nasturtium officinale GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34
Identity = 77/162 (47.53%), Postives = 104/162 (64.20%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILN---FYNLRPVLQYHG--TSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDK 579
            S SQAYVFYK+ Q+ + +   F  L+ VL+Y+   TS FLKN+IKDFF++ GIF+Y+L+ K L N   N  K+ L  +YQY+L +I WARL  Q+W+ + NQ  +  N  L   DSYEK    +Y+K+ FFEAD L N K N KK   Y+L  YKS+N  +K
Sbjct: 1165 SLSQAYVFYKISQIKVSHVSKFSKLKAVLEYNRCITSFFLKNQIKDFFQEQGIFHYKLKDKTLLNSEVNHWKNWLRSNYQYNLPQIAWARLGTQKWKKKINQDYLVLNPSLTNEDSYEKKKFDNYQKKSFFEADSLLNPKHNLKKDSIYNLFCYKSINSTEK 1326          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_JASNU (Putative membrane protein ycf1 OS=Jasminum nudiflorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32
Identity = 98/227 (43.17%), Postives = 124/227 (54.63%), Query Frame = 1
Query:  115 SQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEAD-------LLRNQK-SNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLL---AMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            SQAYVFYKL ++ + N    + VLQY G   FL++EIKD F+  GI    +  K L +   N  K+ L GH QYDLS+ +W+ L+PQ WRNR   H M + K+  KR+ YEK     YEK  F ++          RNQK  NF+K  +YDLLSYKS++ E+KKDS   RSL      ++   N N     LL   A    I INN  G  DI   EK   RKY DW
Sbjct: 1210 SQAYVFYKLSEIQLSNLDKFKSVLQYQGIPFFLRSEIKDSFKTQGI----VHSKRLPSSEMNQWKNWLRGHSQYDLSKTRWSILIPQRWRNRV--HRMVKRKNFNKRNLYEK-----YEKDQFIDSKKENICEVSNRNQKDDNFQKCCKYDLLSYKSIHSENKKDS---RSLF-----DKLSFNSNTAFFDLLVDRARGMPIDINNLTGTGDIPYTEKTPDRKYLDW 1417          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSEX (Putative membrane protein ycf1 OS=Cuscuta exaltata GN=ycf1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 93/254 (36.61%), Postives = 133/254 (52.36%), Query Frame = 1
Query:    7 INKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQE--WRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            INK  KN+I    +              C+  + SQ  AYVFYK+ Q  +LN   L  VLQ+   S F++ +IKD     GIF  ++ H+ L     +  K+ L  + +YDLS I W  L+ Q+  WRNR  ++   + K L K +S+ K  L+ Y+KQ+  ++  + NQK N KK Y+YDLLSYKS+NYE K  S + RS  +V   +  Y N N  +  L A+  + +I   I   DI  + K L RKY  W
Sbjct:  994 INKETKNKIHFLSKLKTSKNCKKNLDLSCDFSNLSQ--AYVFYKISQTGVLNICKLISVLQHTVISFFIQTQIKDLVHTEGIFKSEVIHQKLQWPKTSQWKNWLRLNSKYDLSPIFWFSLISQKQKWRNRVTKYHRPKEKYLNKWNSHGKYRLSDYKKQNVPKS--VSNQKDNSKKCYQYDLLSYKSINYEKKSASVLYRSTPKVTKGQAIYHNDNMSQNYLFAI--TPNIPGKIKRVDIPYIGKNLDRKYLIW 1241          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSRE (Putative membrane protein ycf1 OS=Cuscuta reflexa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.406e-25
Identity = 90/257 (35.02%), Postives = 123/257 (47.86%), Query Frame = 1
Query:    7 INKTNKNRIISTIQXXXXXXXXXXXXXXCNLLSFSQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLV--PQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQ---VNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMDMEKFLYRKYFDW 762
            INK  KN+     +              C+L + SQ  AYVFYK+ Q  +LN   L   LQ +G   F+K +IKD F   GI  Y+L  K L     N  K+ L  + +YDLS I W  L+   Q+WRNR  Q+  ++ K L KR+S     L+  +KQ     ++ +    N+KK Y+YDLLSYKS+NY  K  S I RS  +   ++  +    N   K  +L      I+   YIG        K L RKY  W
Sbjct: 1063 INKETKNKFNLISKLKTYNHCKKNSYLSCDLSNLSQ--AYVFYKIPQTGVLNVCKLISALQQNGIPSFIKTQIKDSFHTQGICKYELIQKKLQWPKTNQWKNWLRVNSEYDLSHILWFSLISQKQKWRNRVEQYHRSKEKYLNKRNSRGNYRLSDSKKQ-----NVPKPVSDNYKKCYQYDLLSYKSINYAKKSASVISRSTPKGQAISYNDNMLQNIPGKIKRLY-----ITYIPYIG--------KTLDRKYLIW 1299          
The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
YCF1_LEPVR2.740e-3743.50Putative membrane protein ycf1 OS=Lepidium virgini... [more]
YCF1_LOBMA6.104e-3740.44Putative membrane protein ycf1 OS=Lobularia mariti... [more]
YCF1_ARAHI1.041e-3648.75Putative membrane protein ycf1 OS=Arabis hirsuta G... [more]
YCF1_BARVE1.776e-3649.06Putative membrane protein ycf1 OS=Barbarea verna G... [more]
YCF1_CRUWA2.319e-3636.72Putative membrane protein ycf1 OS=Crucihimalaya wa... [more]
YCF1_DRANE8.814e-3637.21Putative membrane protein ycf1 OS=Draba nemorosa G... [more]
YCF1_NASOF4.836e-3447.53Putative membrane protein ycf1 OS=Nasturtium offic... [more]
YCF1_JASNU1.556e-3243.17Putative membrane protein ycf1 OS=Jasminum nudiflo... [more]
YCF1_CUSEX7.227e-3036.61Putative membrane protein ycf1 OS=Cuscuta exaltata... [more]
YCF1_CUSRE2.406e-2535.02Putative membrane protein ycf1 OS=Cuscuta reflexa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B11-C21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bp
GAAAGAATTAATAAAACAAATAAAAATAGAATTATTTCGACTATCCAAAA
ATTGATTTCTAAGACTAGTAATAAGAATTCAAAGATTTCTTGTAATTTAT
TGTCTTTTTCACAATCACAAGCATATGTATTTTACAAATTATTACAAGTC
CCAATTTTGAACTTTTATAATTTAAGACCCGTTCTTCAATATCACGGAAC
ATCTCTATTTCTTAAGAATGAAATAAAAGATTTTTTTGAAAAACACGGAA
TCTTTAATTACCAATTAAGACATAAACCCCTTTGGAATTTTGGAAGGAAT
ACACGAAAACACTGTTTAAGCGGGCATTATCAATATGATTTATCTCGGAT
TAAATGGGCTAGATTAGTACCACAAGAATGGCGAAATAGAGCCAATCAAC
ACTGTATGGCTCAAAATAAAGATTTAATTAAAAGAGATTCGTATGAAAAA
AATGGATTAACTCATTACGAAAAACAACATTTTTTTGAAGCAGACCTATT
ACGTAATCAAAAATCGAATTTTAAAAAACACTATAGATATGATCTTTTAT
CATATAAATCGCTTAATTATGAAGATAAGAAAGACTCGTATATTGATAGA
TCACTAGTCCAAGTAAATAATAAAGAAGAGTATTATTCTAATTACAATAG
AAAGAAAGTAAAATTGTTGGCTATGCTGGGAAGTATCTCTATCAATAATT
ATATAGGGGAAGATGATATTATGGATATGGAAAAATTCTTGTATAGAAAA
TATTTTGATTGGA
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