CX069843

Overview
NameCX069843
Unique NameCX069843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2915 contig Csv1_Contig2915:72..834. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSGR (Putative membrane protein ycf1 OS=Cuscuta gronovii GN=ycf1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22
Identity = 72/222 (32.43%), Postives = 114/222 (51.35%), Query Frame = 1
Query:  115 SQAYVFYKLLQ-VPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARL--VPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMD---MEKFLYRKYFDW 762
            SQAYVFYK+ Q +   +   LR +L     ++F+K EIK+FF +HG+   Q   K          KH L  + Q+ LS+I W       + WR + N+      + L KR+S   + L   + ++     L +NQK NF+K YRYD+LS K + +E KK S+I RS + +  + +   + N  +  L A+  ++S+ N +G+   M    +EK   RKY  +
Sbjct: 1021 SQAYVFYKISQQIASFSVCKLRSILNQQVKAIFVKPEIKEFFARHGLIQTQEMDKKSIQLRTPQWKHWLRVNSQHHLSQILWFSFGAKKENWRKKINR---CNKQSLQKRNSSGNSNLDDSKNRNTDNLILNKNQKDNFEKCYRYDVLSSKFIKFEKKKISFIHRSPLSLTRQHQISYHKNMSQNFLFALPKNMSVKNLMGKSQRMHIPYIEKDFDRKYLSF 1239          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSOB (Putative membrane protein ycf1 OS=Cuscuta obtusiflora GN=ycf1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 68/223 (30.49%), Postives = 112/223 (50.22%), Query Frame = 1
Query:  115 SQAYVFYKLLQVPILNFY--NLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARL--VPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDD---IMDMEKFLYRKYFDW 762
            SQAYVFYK+ Q  + NF    LR +L     ++F+K EIK+ F ++G+   Q   K          KH L  + Q+ LS I W+      + WR +  +      + L K +S   + L   + ++     L +N+K NF+K YRYD+LS K + +E KK S   RS + +  +++   + N  +  L A+  ++ + N +G+ +   I  +EK L RKY  +
Sbjct: 1021 SQAYVFYKISQ-EMANFSVCKLRSILNQQVKAVFVKPEIKESFARYGLIQIQKMDKKNLQLRTRQWKHWLRVNSQHHLSHILWSSFGAKKENWRKKIKRCNKFNKQSLQKGNSKGNSNLDDSKNRNKNNLILNKNKKDNFEKCYRYDVLSSKFIKFEKKKTSLFHRSRISLTRQKQILYHKNMSQNFLFALPKNMLVKNLMGKSERIHIPYIEKDLDRKYLSF 1242          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_PELHO (Putative membrane protein ycf1 OS=Pelargonium hortorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 80/233 (34.33%), Postives = 96/233 (41.20%), Query Frame = 1
Query:   13 KTNKNRIISTIQXXXXXXXXXXXXXXCNLLSF---SQSQAYVFYKLLQVP-----ILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDL-SRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGS 684
            K  KNR ISTI+                 L F   S SQAYVFYKL Q       +  F NLR                                      G N  K  L GH+ Y L S I+W+RL  Q+WRN+ NQ   A+N +  K DSYE + L             +  QK  FKKH RYDLL+Y  LN E KKD Y+    +  NN+      YN  K  L+ ML S
Sbjct: 1486 KRKKNRFISTIKKHSFNMRNSQISKSQKTLVFDLSSLSQAYVFYKLSQTEKSSFRVSKFQNLRNC----------------------------------RVGMNRWKEWLRGHFDYYLLSDIRWSRLEAQKWRNKMNQCRTAENHNFKKGDSYEIDSLP------------INPQKLKFKKHLRYDLLAYSFLNAEYKKDPYVIAPSLVSNNQTAISHLYNIHKESLVNMLTS 1672          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_EPIVI (Putative membrane protein ycf1 OS=Epifagus virginiana GN=ycf1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 75/241 (31.12%), Postives = 102/241 (42.32%), Query Frame = 1
Query:  115 SQAYVFYKLLQVPILNFYNLRPVLQ------YHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQE-----WRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYED--KKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISIN--NY----------IGEDDIMDMEKFLYRKYFDW 762
            SQAYVFYKL QV + N Y  R  LQ      Y     F K E KDF +  G+ +     K   N+  N  K  L  HY+Y LS+ K   L+ ++     WRN A+                                          KK+ RYDLLSYK LN ++  K + ++++S  Q NNK+E +  Y  K + L   + +I I+  NY           G   +  +EK   RKYFDW
Sbjct: 1152 SQAYVFYKLSQVLVSNSYKFRADLQHLINYNYKRIPPFFKPEKKDFLKTQGVVDLNFGDKKFKNYAINKWKFWLREHYKYSLSQKKRPILISEKCRTVHWRNIAS------------------------------------------KKNNRYDLLSYKILNSKNKTKTEFFLNKSSSQKNNKQEIF--YISKNIPLKIFMRNIHIHKKNYFNNNIKNIVRFGTLYMEYIEKMANRKYFDW 1348          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1B_MARPO (Putative membrane protein ycf1 C-terminal part OS=Marchantia polymorpha GN=ycf1 PE=5 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 48/174 (27.59%), Postives = 80/174 (45.98%), Query Frame = 1
Query:  115 SQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQ-NKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEY 633
            SQAYVF K+ ++   N   L+ +L+Y  + L++K   + F    GI         L NF     K  L G  +Y+ S  +W ++ PQ+WRN+ ++H   Q NK L       KN        +FF    +  Q     K ++ +LL+Y   ++     +   R+ + +N K+ Y
Sbjct:    5 SQAYVFNKIWEIKTKNKSYLKCLLKYWTSHLWIKKNFQSFLSNQGIVG----SLELQNFKEENWKEWLKGFNRYNFSSKEWYKITPQQWRNKVSEHWKNQENKKLNPNQQISKN--------NFFINTSILEQTKKRNKIFKQNLLTYSCFDF---TKNLAIRNFLNLNRKKIY 163          
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_PINKO (Putative protein ycf1 OS=Pinus koraiensis PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.582e-11
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLF--LKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKS---NFKKHYRYDLLSYKSLNYEDKKD 585
            S SQAYVF+K+ Q+  ++    +  L+Y   + +  +K +IK+  +   I    L H+   +   N  K  L    +Y LS   W+R+ PQ+WRNR N+ C            YE+  + + +K+ +  A ++           K YRYDLLSY  LN   + D
Sbjct: 1437 SMSQAYVFHKIWQIGAIDRSYSKYFLKYRAQTSYPLIKKKIKELLDIQRI----LDHEKPQDLKENDWKQWLRCFDRYKLSPQIWSRINPQKWRNRVNKQCTC----------YEERFIPYEKKKDYIFATVIEPSLGLLRKMNKRYRYDLLSYSYLNSTKELD 1586          
The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
YCF1_CUSGR1.460e-2232.43Putative membrane protein ycf1 OS=Cuscuta gronovii... [more]
YCF1_CUSOB1.973e-1930.49Putative membrane protein ycf1 OS=Cuscuta obtusifl... [more]
YCF1_PELHO4.395e-1934.33Putative membrane protein ycf1 OS=Pelargonium hort... [more]
YCF1_EPIVI1.323e-1531.12Putative membrane protein ycf1 OS=Epifagus virgini... [more]
YCF1B_MARPO1.514e-1127.59Putative membrane protein ycf1 C-terminal part OS=... [more]
YCF1_PINKO2.582e-1129.88Putative protein ycf1 OS=Pinus koraiensis PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13B11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13B11-C21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bp
GAAAGAATTAATAAAACAAATAAAAATAGAATTATTTCGACTATCCAAAA
ATTGATTTCTAAGACTAGTAATAAGAATTCAAAGATTTCTTGTAATTTAT
TGTCTTTTTCACAATCACAAGCATATGTATTTTACAAATTATTACAAGTC
CCAATTTTGAACTTTTATAATTTAAGACCCGTTCTTCAATATCACGGAAC
ATCTCTATTTCTTAAGAATGAAATAAAAGATTTTTTTGAAAAACACGGAA
TCTTTAATTACCAATTAAGACATAAACCCCTTTGGAATTTTGGAAGGAAT
ACACGAAAACACTGTTTAAGCGGGCATTATCAATATGATTTATCTCGGAT
TAAATGGGCTAGATTAGTACCACAAGAATGGCGAAATAGAGCCAATCAAC
ACTGTATGGCTCAAAATAAAGATTTAATTAAAAGAGATTCGTATGAAAAA
AATGGATTAACTCATTACGAAAAACAACATTTTTTTGAAGCAGACCTATT
ACGTAATCAAAAATCGAATTTTAAAAAACACTATAGATATGATCTTTTAT
CATATAAATCGCTTAATTATGAAGATAAGAAAGACTCGTATATTGATAGA
TCACTAGTCCAAGTAAATAATAAAGAAGAGTATTATTCTAATTACAATAG
AAAGAAAGTAAAATTGTTGGCTATGCTGGGAAGTATCTCTATCAATAATT
ATATAGGGGAAGATGATATTATGGATATGGAAAAATTCTTGTATAGAAAA
TATTTTGATTGGA
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