CX069843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSGR (Putative membrane protein ycf1 OS=Cuscuta gronovii GN=ycf1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.460e-22 Identity = 72/222 (32.43%), Postives = 114/222 (51.35%), Query Frame = 1 Query: 115 SQAYVFYKLLQ-VPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARL--VPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDDIMD---MEKFLYRKYFDW 762 SQAYVFYK+ Q + + LR +L ++F+K EIK+FF +HG+ Q K KH L + Q+ LS+I W + WR + N+ + L KR+S + L + ++ L +NQK NF+K YRYD+LS K + +E KK S+I RS + + + + + N + L A+ ++S+ N +G+ M +EK RKY + Sbjct: 1021 SQAYVFYKISQQIASFSVCKLRSILNQQVKAIFVKPEIKEFFARHGLIQTQEMDKKSIQLRTPQWKHWLRVNSQHHLSQILWFSFGAKKENWRKKINR---CNKQSLQKRNSSGNSNLDDSKNRNTDNLILNKNQKDNFEKCYRYDVLSSKFIKFEKKKISFIHRSPLSLTRQHQISYHKNMSQNFLFALPKNMSVKNLMGKSQRMHIPYIEKDFDRKYLSF 1239
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_CUSOB (Putative membrane protein ycf1 OS=Cuscuta obtusiflora GN=ycf1 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19 Identity = 68/223 (30.49%), Postives = 112/223 (50.22%), Query Frame = 1 Query: 115 SQAYVFYKLLQVPILNFY--NLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARL--VPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISINNYIGEDD---IMDMEKFLYRKYFDW 762 SQAYVFYK+ Q + NF LR +L ++F+K EIK+ F ++G+ Q K KH L + Q+ LS I W+ + WR + + + L K +S + L + ++ L +N+K NF+K YRYD+LS K + +E KK S RS + + +++ + N + L A+ ++ + N +G+ + I +EK L RKY + Sbjct: 1021 SQAYVFYKISQ-EMANFSVCKLRSILNQQVKAVFVKPEIKESFARYGLIQIQKMDKKNLQLRTRQWKHWLRVNSQHHLSHILWSSFGAKKENWRKKIKRCNKFNKQSLQKGNSKGNSNLDDSKNRNKNNLILNKNKKDNFEKCYRYDVLSSKFIKFEKKKTSLFHRSRISLTRQKQILYHKNMSQNFLFALPKNMLVKNLMGKSERIHIPYIEKDLDRKYLSF 1242
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_PELHO (Putative membrane protein ycf1 OS=Pelargonium hortorum GN=ycf1-A PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19 Identity = 80/233 (34.33%), Postives = 96/233 (41.20%), Query Frame = 1 Query: 13 KTNKNRIISTIQXXXXXXXXXXXXXXCNLLSF---SQSQAYVFYKLLQVP-----ILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDL-SRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGS 684 K KNR ISTI+ L F S SQAYVFYKL Q + F NLR G N K L GH+ Y L S I+W+RL Q+WRN+ NQ A+N + K DSYE + L + QK FKKH RYDLL+Y LN E KKD Y+ + NN+ YN K L+ ML S Sbjct: 1486 KRKKNRFISTIKKHSFNMRNSQISKSQKTLVFDLSSLSQAYVFYKLSQTEKSSFRVSKFQNLRNC----------------------------------RVGMNRWKEWLRGHFDYYLLSDIRWSRLEAQKWRNKMNQCRTAENHNFKKGDSYEIDSLP------------INPQKLKFKKHLRYDLLAYSFLNAEYKKDPYVIAPSLVSNNQTAISHLYNIHKESLVNMLTS 1672
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_EPIVI (Putative membrane protein ycf1 OS=Epifagus virginiana GN=ycf1 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15 Identity = 75/241 (31.12%), Postives = 102/241 (42.32%), Query Frame = 1 Query: 115 SQAYVFYKLLQVPILNFYNLRPVLQ------YHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQE-----WRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYED--KKDSYIDRSLVQVNNKEEYYSNYNRKKVKLLAMLGSISIN--NY----------IGEDDIMDMEKFLYRKYFDW 762 SQAYVFYKL QV + N Y R LQ Y F K E KDF + G+ + K N+ N K L HY+Y LS+ K L+ ++ WRN A+ KK+ RYDLLSYK LN ++ K + ++++S Q NNK+E + Y K + L + +I I+ NY G + +EK RKYFDW Sbjct: 1152 SQAYVFYKLSQVLVSNSYKFRADLQHLINYNYKRIPPFFKPEKKDFLKTQGVVDLNFGDKKFKNYAINKWKFWLREHYKYSLSQKKRPILISEKCRTVHWRNIAS------------------------------------------KKNNRYDLLSYKILNSKNKTKTEFFLNKSSSQKNNKQEIF--YISKNIPLKIFMRNIHIHKKNYFNNNIKNIVRFGTLYMEYIEKMANRKYFDW 1348
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1B_MARPO (Putative membrane protein ycf1 C-terminal part OS=Marchantia polymorpha GN=ycf1 PE=5 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11 Identity = 48/174 (27.59%), Postives = 80/174 (45.98%), Query Frame = 1 Query: 115 SQAYVFYKLLQVPILNFYNLRPVLQYHGTSLFLKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQ-NKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKSNFKKHYRYDLLSYKSLNYEDKKDSYIDRSLVQVNNKEEY 633 SQAYVF K+ ++ N L+ +L+Y + L++K + F GI L NF K L G +Y+ S +W ++ PQ+WRN+ ++H Q NK L KN +FF + Q K ++ +LL+Y ++ + R+ + +N K+ Y Sbjct: 5 SQAYVFNKIWEIKTKNKSYLKCLLKYWTSHLWIKKNFQSFLSNQGIVG----SLELQNFKEENWKEWLKGFNRYNFSSKEWYKITPQQWRNKVSEHWKNQENKKLNPNQQISKN--------NFFINTSILEQTKKRNKIFKQNLLTYSCFDF---TKNLAIRNFLNLNRKKIY 163
BLAST of CX069843 vs. ExPASy Swiss-Prot
Match: YCF1_PINKO (Putative protein ycf1 OS=Pinus koraiensis PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.582e-11 Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 109 SQSQAYVFYKLLQVPILNFYNLRPVLQYHGTSLF--LKNEIKDFFEKHGIFNYQLRHKPLWNFGRNTRKHCLSGHYQYDLSRIKWARLVPQEWRNRANQHCMAQNKDLIKRDSYEKNGLTHYEKQHFFEADLLRNQKS---NFKKHYRYDLLSYKSLNYEDKKD 585 S SQAYVF+K+ Q+ ++ + L+Y + + +K +IK+ + I L H+ + N K L +Y LS W+R+ PQ+WRNR N+ C YE+ + + +K+ + A ++ K YRYDLLSY LN + D Sbjct: 1437 SMSQAYVFHKIWQIGAIDRSYSKYFLKYRAQTSYPLIKKKIKELLDIQRI----LDHEKPQDLKENDWKQWLRCFDRYKLSPQIWSRINPQKWRNRVNKQCTC----------YEERFIPYEKKKDYIFATVIEPSLGLLRKMNKRYRYDLLSYSYLNSTKELD 1586 The following BLAST results are available for this feature:
BLAST of CX069843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069843 ID=CX069843; Name=CX069843; organism=Citrus sinensis; type=EST; length=763bpback to top |