CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9247 contig Csv1_Contig9247:216..514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.180e-34
Identity = 70/98 (71.43%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYD+VHG WKH+ELKVKDEKTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT               VVISAPS DAPMFVVGVN  EYK +
Sbjct:   49 KYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNHTEYKSD 146          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.180e-34
Identity = 70/98 (71.43%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYD+VHG WKH+E+KVKD KTLLFGEK VAVFG RNPEEIPWA  GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNEKEYK +
Sbjct:   16 KYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCGVNEKEYKSD 113          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.342e-34
Identity = 71/98 (72.45%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WK +E+KVKDEKTLLFGEK VAVFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:   51 KYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 148          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.283e-34
Identity = 66/95 (69.47%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYD+VHGHWKH+++K+KD+KTLLFGEKPV VFG RNPEEIPW + GA+YVVESTGVFT               VVISAPSKDAPMFVVGVNE +Y
Sbjct:   48 KYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.845e-33
Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WKH+E+ VKD KTLLFGEK VAVFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE +YK +
Sbjct:   51 KYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSD 148          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.111e-33
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WK++EL VKD  TLLFG+KPV VF  RNPEEIPWA TGA+ +VESTGVFT               V+ISAPSKDAPMFVVGVNE EYKPE
Sbjct:   49 KYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPE 146          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.111e-33
Identity = 68/98 (69.39%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WK +E+KVKD  TLLFGEK V VFG RNPEEIPW +TG EYVVESTGVFT               VVI+APSKDAPMFVVGVNE EYKP+
Sbjct:   51 KYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKPD 148          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.369e-33
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYD+VHGHWKH+++ +KD KTLLFG+KPV VFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE +Y
Sbjct:   48 KYDTVHGHWKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.040e-32
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYD+VHG WKH+++ +KD KTLLFGEKPV VFG RNPEEIPW + GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNE +Y
Sbjct:   48 KYDTVHGQWKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKY 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.480e-32
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG WK +ELKVKD KTLLFG+KP+ VFG RNPEE PW + GAEYVVESTGVFT               VVISAPS +APMFVVGVNEKEYK +
Sbjct:   47 KYDSVHGQWKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSGNAPMFVVGVNEKEYKKD 144          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3PC_RANAC2.180e-3471.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU2.180e-3471.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA6.342e-3472.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU8.283e-3469.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY1.845e-3370.41Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA4.111e-3368.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI4.111e-3369.39Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE5.369e-3368.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE2.040e-3268.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR3.480e-3268.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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