CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.735e-15
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            K+DS HG +K   +  +    ++ G+K + VF  R+P  I WA  GAEY+VESTGVFT               V+ISAPS DAPMFV GVN   YKP+
Sbjct:   45 KFDSTHGRFK-GTVAAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPD 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.266e-15
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG +K   ++ KD K ++ G KP++V+  R+P  IP  + GAEY+VESTGVFT               V+ISAPS DAPMFVVGVN + Y  +
Sbjct:   47 KYDSTHGRFK-GTVEAKDGKLVVNG-KPISVYAERDPCCIP-GRIGAEYIVESTGVFTTKEKAGAHLTGGAKKVIISAPSADAPMFVVGVNLESYSSD 141          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 2.266e-15
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG + H  +K ++ K ++ G K + +F  R+P  I W   GA YVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 QYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.266e-15
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKP---VAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS HG +K   +  +  K ++   K    +AV   ++P EIPW   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN  +Y
Sbjct:   48 KYDSTHGRFK-GHVSAEGGKLIVTNGKTTHQIAVHNSKDPAEIPWGVEGAEYVVESTGVFTHTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNDKY 144          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.266e-15
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG ++ +     D+  +    + +      +P +IPW + GA+YVVESTGVFT               VVISAPS DAPMFV+GVN  +Y P+
Sbjct:   40 KYDSVHGRYEGDVQG--DKHGITINGEQIKTLAMMDPTQIPWGEVGADYVVESTGVFTTVDKCQAHLKGGAKKVVISAPSADAPMFVMGVNADKYDPK 135          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.960e-15
Identity = 46/98 (46.94%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            K+DS HG +K   +  +    ++ G+K + VF  R+P  I WA  GAEYVVESTGVFT               VVISAPS DAPMFV GVN   Y P+
Sbjct:   45 KFDSTHGRFK-GTVSAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTTEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYSPD 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 2.960e-15
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG + +  +K ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 QYDSTHGKF-NGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.960e-15
Identity = 46/102 (45.10%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    7 YDSVHGHWKHNELKVKDEKTLLFGEKP------VAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            YDS HG +     K+      L  EK       + VF  ++P EI WA+ GAEYV+ESTGVFT               VVISAPS DAPM+V+GVNE +Y P
Sbjct:   49 YDSTHGRFNG---KISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAEVGAEYVIESTGVFTTIEKASAHLKGGAKKVVISAPSADAPMYVMGVNEDKYDP 147          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.866e-15
Identity = 44/97 (45.36%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYK 291
            L+YD+VHG  K +     DE  +    KP+ VF   NPE I W +   +YVVESTG FT               VVISAPS DAPMFV+GVN + Y+
Sbjct:   44 LEYDTVHG--KFDGSLSHDETHIFVNGKPIRVFNEMNPENIKWGEEQVQYVVESTGAFTTLEKASTHLKNGVEKVVISAPSSDAPMFVMGVNHELYE 138          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG +K  E+K +  K ++ G   + V+  R+P  I W   GA YVVESTGVFT               V+ISAPS DAPMFV+GVN ++Y
Sbjct:   46 QYDSTHGKYK-GEVKAEGGKLVIDGHA-ITVYSERDPANIKWGDAGATYVVESTGVFTTIEKASAHIKGGAKRVIISAPSADAPMFVMGVNHEKY 138          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3P2_DROME1.735e-1545.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_RHIMI2.266e-1547.96Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_PIG2.266e-1545.26Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_ONCVO2.266e-1545.92Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3PC_SCEVA2.266e-1542.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_DROHY2.960e-1546.94Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_BOVIN2.960e-1545.26Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P1_GLORO2.960e-1545.10Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_PHYIN3.866e-1545.36Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_DANRE5.049e-1545.26Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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