CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG +K  E+   D   L+   K VAVF  ++P  +PW K G +  V+STGVF                VVI+APSK APMFVVGVNE +Y  E
Sbjct:   46 KYDSTHGKYK-GEVS-HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE 141          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG +K  E+       ++ G K +AVF  ++P  +PW K G + V++STGVF                VVI+APSK APMFVVGVNE +Y  E
Sbjct:   46 KYDSTHGRYK-GEVTTSGNDLVIDGHK-IAVFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE 141          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.049e-15
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            K+DS HG +K   +  +    ++ G+K + VF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   Y P+
Sbjct:   45 KFDSTHGRFK-GTVAAEGGFLVVNGQK-ITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPD 140          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.594e-15
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            KYDS HG +K   ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+                VVISAPS DAPMFV+GVNE +Y P
Sbjct:  119 KYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP 213          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.594e-15
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG ++  +++ KD K ++ G K +A F  R P  I WA  GAEY+VESTGVF                VVI+AP    P +VVGVN  +Y P+
Sbjct:   46 KYDSVHGRYQ-GKVETKDGKLIIDGHK-IAAFAEREPANIKWADCGAEYIVESTGVFKTEELAKEHLKGGAKKVVITAPGSGVPTYVVGVNLDKYDPK 141          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.125e-14
Identity = 44/98 (44.90%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKP---VAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYDS HG +K   +  +  K ++   K    ++V   ++P EIPW   GAEYVVESTGVFT               V+ISAPS DAPMFV+GVN   Y
Sbjct:   48 KYDSTHGRFK-GSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPSADAPMFVMGVNNDMY 144          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.469e-14
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP 294
            +KYDSVHG +KH+    K       D+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT               VVISAP S  A  FV+GVN   Y P
Sbjct:   50 MKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNP 155          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.919e-14
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            KYDS HG +K N      +  L+     +  +  ++P+EIPW+  G  YVVE TGV+                VV++APS DAPMFV+GVNEK+Y P
Sbjct:  151 KYDSTHGRYKGNVEHKNGQ--LVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPSPDAPMFVMGVNEKDYNP 245          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    4 KYDSVHGHWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG +K          L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               V+ISAPS DAPMFVVGVN ++Y
Sbjct:   48 QYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 44/102 (43.14%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    4 KYDSVHGHWKHNE-------LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            +YDS HG +K          L  K+ K+    +  + V+  R+P EI W   GA+YVVESTGVFT               V+ISAPS DAPMFVVGVN ++Y
Sbjct:   48 QYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGSAGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3P1_KLUMA5.049e-1545.92Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_KLULA5.049e-1543.88Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_DROME5.049e-1545.92Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3PT_HUMAN6.594e-1542.27Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_AGABI6.594e-1543.88Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_BRUMA1.125e-1444.90Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3PG_TRYBB1.469e-1441.51Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PT_MOUSE1.919e-1441.24Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_CAEEL2.506e-1443.14Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P3_CAEBR2.506e-1443.14Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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