CX069822

Overview
NameCX069822
Unique NameCX069822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9247 contig Csv1_Contig9247:216..514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.480e-32
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYD+VHG WKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VVISAPSKDAPMFV GVNE +Y
Sbjct:   48 KYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.480e-32
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            KYD+VHG WKH+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VVISAPSKDAPMFV GVNE +Y
Sbjct:   48 KYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKY 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.013e-31
Identity = 67/98 (68.37%), Postives = 74/98 (75.51%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDSVHG  K +E+K+KDEKTLLFGE PVAVFG RNPEEIPW + GA++VVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:   48 KYDSVHGQCKSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 145          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 55/98 (56.12%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG WK  E+ +  E  L FG  PVAV+  R+P EIPW K GA++VVESTGVFT               VVISAPSKDAPMFV+GVNE +Y  E
Sbjct:   51 KYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVMGVNENKYSDE 148          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.620e-21
Identity = 53/98 (54.08%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG +K  +++ KD K ++ G KP++VFG R+P  IPW K GA+YVVESTGVFT               V+ISAPS DAPMFV GVN + YKPE
Sbjct:   47 KYDSTHGRFK-GKVETKDGKLVIEG-KPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCGVNLEAYKPE 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.340e-20
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            K+DS HG +    ++ KD K ++ G K + ++G R+P EIPWA+ GA+YVVESTGVFT               V+ISAPSKDAPMFV GVNE +Y P+
Sbjct:   48 KFDSTHGRYA-GSVETKDGKLIVNG-KSITIYGHRDPAEIPWAEAGADYVVESTGVFTLKEKAEKHFTGGAKKVIISAPSKDAPMFVCGVNEDKYTPD 143          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.891e-20
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG +K  E+  KD+  ++ G+  + VFG ++P  IPW K G +YV+ESTGVFT               V+I+APS DAPMFVVGVNE++Y P+
Sbjct:   47 KYDSTHGRYK-GEVTSKDDSLVIDGQS-IKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQKHIDGGAKKVIITAPSSDAPMFVVGVNEQKYTPD 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 297
            KYDS HG +K  +++ KD   ++ G K + VFG R+P  IPW K GA+YVVESTGVFT               V+ISAPS DAPMFVVGVN   YKP+
Sbjct:   47 KYDSTHGRFK-GKVEAKDGGLIIDG-KHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPSGDAPMFVVGVNLDAYKPD 142          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    4 KYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKP 294
            K+DSVHG +K   ++ KD K ++ G KP+AVFG R+P  IPW  +GA+YVVESTGVFT               V+ISAPS DAPM+V GVN   Y P
Sbjct:   47 KFDSVHGRYK-GTVEAKDGKLIIAG-KPIAVFGERDPASIPWGASGADYVVESTGVFTTIDKASAHLKGGAKKVIISAPSADAPMYVCGVNLDAYDP 141          
BLAST of CX069822 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 50/96 (52.08%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    1 LKYDSVHGHWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEY 288
            LKYDS HG +  +   V+D   L+   + V  +  RNPEEIPWA+TGAEY+VESTGVFT               V+ISAPS DAPMFV+GVN K Y
Sbjct:   47 LKYDSTHGQFNGDIQTVEDG--LVVNSRNVKFYNKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPSADAPMFVMGVNHKSY 140          
The following BLAST results are available for this feature:
BLAST of CX069822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
G3PC_ORYSJ3.480e-3267.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI3.480e-3267.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR1.013e-3168.37Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA1.199e-2456.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYCU1.620e-2154.08Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3PC_GRAVE2.340e-2050.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_DEBHA8.891e-2047.96Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_YARLI1.161e-1952.04Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_OMPOL1.161e-1951.55Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_ERYGR1.161e-1952.08Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13A08-A15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069822 ID=CX069822; Name=CX069822; organism=Citrus sinensis; type=EST; length=299bp
CTTAAGTACGATAGTGTTCACGGTCATTGGAAGCACAACGAGTTGAAGGT
CAAGGACGAGAAGACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCG
GATTCAGGAACCCAGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTAT
GTTGTGGAATCAACTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCA
CTTGAAGGGTGGTGCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATG
CTCCCATGTTTGTTGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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